@article{02KTKPCincdb, 
	Author = {Kaeffer, B. and Trubuil, A. and Kervrann, C. and Pardini, L. and Cherbut, C.},
	Title = {Three-Dimensional binding of epidermal growth factor peptides in colonic tissues produced from rotating bioreactor},
	Journal = {In Vitro Cellular and Developmental Biology - Animal},
	Volume = {38},
	Number = {8},
	Pages = {436--439},
	Year = {2002}
} 


@article{02HTijcv, 
	Author = {Kervrann, C. and Hoebeke, M. and Trubuil, A.},
	Title = {Isophotes selection and reaction-diffusion model for object boundaries estimation},
	Journal = {Int. Journal on Computer Vision},
	Volume = {50},
	Number = {1},
	Pages = {63--94},
	Year = {2002}
} 


@InProceedings{02TKMMelmi02, 
	Author = {Trubuil, A. and Kervrann, C. and Maillet, Ph. and De Mey, J.},
	Title = {Tracking centromeric regions in 4D},
	BookTitle = {European Light Microscopy Initiative meeting (ELMI'02)},
	Address = {Paris, France},
 	Year = {2002}
} 


@article{02Tjmiv, 
	Author = {Kervrann, C. and Trubuil, A.},
	Title = {Optimal level curves and minimizers of cost functionals in image segmentation},
	Journal = {Journal of Mathematical Imaging and Vision},
	Volume = {17},
	Number = {2},
	Pages = {153--174},
	Year = {2002}
} 


@article{01Kias, 
	Author = {Kervrann, C.},
	Title = {Bayesian image segmentation through level lines selection},
	Journal = {Image Analysis and Stereology},
	Volume = {20},
	Number = {1},
	Pages = {251--256},
	Year = {2001}
} 


@article{99KHip, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Statistical deformable model-based segmentation of image motion},
	Journal = {IEEE Transactions on Image Processing},
	Volume = {8},
	Number = {4},
	Pages = {583--588},
	Month = {April},
	Year = {1999}
} 


@article{98Ksp, 
	Author = {Kervrann, C.},
	Title = {Learning probabilistic deformation models from image sequences},
	Journal = {Signal Processing},
	Number = {71},
	Pages = {155--171},
	Year = {1998}
} 


@InProceedings{02KTKPCwcivb, 
	Author = {Kaeffer, B. and Trubuil, A. and Kervrann, C. and Pardini, L. and Cherbut, C.},
	Title = {{3D} rendering of EGF/erb-B1 complexes, VT-1008},
	BookTitle = {World Congress on In Vitro Biology},
	Address = {Orlando, Florida},
 	Year = {2002}
} 


@InProceedings{02PTKKHCinabis, 
	Author = {Pardini, L. and Trubuil, A. and Kaeffer, B. and Kervrann, C. and Hoebeke, M. and Cherbut, C.},
	Title = {3D analysis of biomarkers and investigation of temporal series by Quant3D, a Linux/UNIX software package},
	BookTitle = {Internet World Congress for Biomedical Science, INABIS'2002},
	Year = {2002}
} 


@InProceedings{02KTKPCinabis, 
	Author = {Kaeffer, B. and Trubuil, A. and Kervrann, C. and Pardini, L. and Cherbut, C.},
	Title = {3D imaging of colonic crypt cells by fluorescent laser scanning confocal microscopy},
	BookTitle = {Internet World Congress for Biomedical Science, INABIS'2002},
	Year = {2002}
} 


@InProceedings{01Kscalespace, 
	Author = {Kervrann, C.},
	Title = {Bayesian object detection through level curves selection},
	BookTitle = {Int. Conf. on Scale Space and Morphology in Computer Vision (Scale-Space'01)},
	Pages = {85--97},
	Address = {Vancouver, Canada},
 	Month = {July},
	Year = {2001}
} 


@InProceedings{01THKKWKtaima, 
	Author = {Trubuil, A. and Hoebeke, M. and Kervrann, C. and Kiêu, K. and Wang, J. and Kaeffer, B.},
	Title = {Comparaison fonctionnelle en microscopie confocale},
	BookTitle = {Workshop Traitement et Analyse d'Images: Méthodes et Applications, TAIMA 2001},
	Pages = {269--276},
	Address = {Hammameth, Tunisie},
 	Month = {},
	Year = {2001}
} 


@InProceedings{00KHTKDCinabis, 
	Author = {Kaeffer, B. and Hoebeke, M. and Trubuil, A. and Kervrann, C. and Devaux, M. and Cherbut, C.},
	Title = {3-dimensional organization of normal and cancerous intestinal tissues cultured in rotating bioreactor analyzed by multidimensional microscopy imaging},
	BookTitle = {In Internet World Congress for Biomedical Science, INABIS 2000},
	Year = {2000}
} 


@InProceedings{00KTKDCwcivb, 
	Author = {Kaeffer, B. and Trubuil, A. and Kervrann, C. and Devaux, M. and Cherbut, C.},
	Title = {3D distribution of erb-B1 receptors on rat colonocytes in primary cultures},
	BookTitle = {World Congress on In Vitro Biology},
	Address = {Saint-Louis, Missouri},
 	Year = {2000}
} 


@InProceedings{00KHTeccv, 
	Author = {Kervrann, C. and Hoebeke, M. and Trubuil, A.},
	Title = {Level lines as global minimizers of energy functionals in image segmentation},
	BookTitle = {European Conference on Computer Vision, ECCV'00},
	Pages = {241--256},
	Address = {Dublin, Ireland},
 	Month = {June},
	Year = {2000}
} 


@InProceedings{99KHTiccv, 
	Author = {Kervrann, C. and Hoebeke, M. and Trubuil, A.},
	Title = {A level line selection approach for object boundary estimation},
	BookTitle = {7h IEEE Int. Conf. on Computer Vision, ICCV'99},
	Pages = {963--968},
	Address = {Kerkyra, Greece},
 	Month = {September},
	Year = {1999}
} 


@InProceedings{99KHTgretsi, 
	Author = {Kervrann, C. and Hoebeke, M. and Trubuil, A.},
	Title = {Segmentation d'images par sélection de courbes de niveau},
	BookTitle = {Colloque GRETSI'99},
	Pages = {631--634},
	Address = {Vannes},
 	Month = {September},
	Year = {1999}
} 


@Misc{93KHorasis, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Modèles statistiques déformables et optimisation globale pour la segmentation des images},
	BookTitle = {4èmes journées ORASIS},
	Pages = {78--81},
	Address = {Mulhouse},
 	Month = {October},
	Year = {1993}
} 


@InProceedings{93KHjiimrv, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Vers une segmentation non supervisée des images naturelles texturées : une approche markovienne},
	BookTitle = {2èmes journées internationales - Interface des mondes réels et virtuels},
	Pages = {45--54},
	Address = {Montpellier},
 	Month = {March},
	Year = {1993}
} 


@TechReport{02Krt, 
	Author = {Kervrann, C.},
	Title = {A level set-based morphological approach to bayesian image segmentation in confocal microscopy},
	Institution = {Unité de Biométrie, INRA-Jouy-en-Josas},
	Year = {2002}
} 


@TechReport{01RTKKrt, 
	Author = {Rospars, J-P. and Trubuil, A. and Kervrann, C. and Kiêu, K.},
	Title = {Projet de recherche en anatomie computationnelle},
	Institution = {Unité de Biométrie, INRA-Jouy-en-Josas},
	Year = {2001}
} 


@TechReport{99Krt, 
	Author = {Kervrann, C.},
	Title = {Stochastic textural templates for object detection in images},
	Institution = {Unité de Biométrie, INRA-Jouy-en-Josas},
	Year = {1999}
} 


@TechReport{98KTHKRrt, 
	Author = {Kervrann, C. and Trubuil, A. and Hoebeke, M. and Kiêu, K. and Rospars, J.},
	Title = {Analyse d'images en microscopie multidimensionnelle},
	Institution = {Unité de Biométrie, INRA-Jouy-en-Josas},
	Year = {1998}
} 


@TechReport{Kervrann93a, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A hierarchical statistical framework for the segmentation of deformable objects in image sequences},
	Number = {2133},
	Institution = {INRIA},
	Year = {1993}
} 


@TechReport{Kervrann93b, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A Markov Random field model-based approach to unsupervised texture segmentation using local and global spatial statistics},
	Number = {752},
	Institution = {IRISA},
	Month = {October},
	Year = {1993}
} 


@TechReport{Kervrann93c, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A Markov random field model-based approach to unsupervised texture segmentation using local and global spatial statistics},
	Number = {2062},
	Institution = {INRIA},
	Year = {1993}
} 


@TechReport{Kervrann93d, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A hierarchical statistical framework for the segmentation of deformable objects in image sequences},
	Number = {780},
	Institution = {IRISA},
	Month = {December},
	Year = {1993}
} 


@InProceedings{Kervrann93e, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A statistical model-based approach to unsupervised texture segmentation},
	BookTitle = {8th Scandinavian Conference on Image Analysis (SCIA'93)},
	Pages = {284--288},
	Address = {Tromso},
 	Month = {May},
	Year = {1993}
} 


@InProceedings{Kervrann94a, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A Hierarchical Statistical Framework for the Segmentation of Deformable Objects in Image Sequences},
	BookTitle = {IEEE Conf. Computer Vision and Pattern Recognition},
	Pages = {724--728},
	Address = {Seattle, Washington},
 	Month = {June},
	Year = {1994}
} 


@InProceedings{Kervrann94b, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Robust tracking of stochastic deformable models in long image sequences},
	BookTitle = {IEEE Int. Conf. Image Processing, ICIP'94},
	Pages = {88--92},
	Address = {Austin, Texas},
 	Month = {November},
	Year = {1994}
} 


@article{Kervrann94c, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Segmentation non supervisée des images naturelles texturées : une approche statistique},
	Journal = {Traitement du Signal},
	Volume = {11},
	Number = {1},
	Pages = {31--41},
	Year = {1994}
} 


@InProceedings{Kervrann94d, 
	Author = {Kervrann, C. and Heitz, F. and Ricquebourg, Y.},
	Title = {Modélisation et segmentation d'objets déformables dans des séquences d'images : une approche statistique},
	BookTitle = {Colloque Automatique-Génie Informatique-Image AGI'94},
	Address = {Poitiers, France},
 	Month = {June},
	Year = {1994}
} 


@PhdThesis{Kervrann95a, 
	Author = {Kervrann, C.},
	Title = {Modèles statistiques pour la segmentation et le suivi de structures déformables bidimensionnelles dans une séquence d'images},
	School = {Université de Rennes 1, Traitement du Signal et Télécommunications},
	Month = {November},
	Year = {1995}
} 


@article{Kervrann95b, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A Markov random field model-based approach to unsupervised texture segmentation using local and global spatial statistics},
	Journal = {IEEE Trans. on Image Processing},
	Volume = {4},
	Number = {6},
	Pages = {856--862},
	Month = {June},
	Year = {1995}
} 


@InProceedings{Kervrann95c, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Learning structure and deformation modes of nonrigid objects in long image sequences},
	BookTitle = {International Workshop on Automatic Face- and Gesture-Recognition (FG'95)},
	Pages = {104--109},
	Address = {Zurich},
 	Month = {June},
	Year = {1995}
} 


@InProceedings{Kervrann96a, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Statistical model-based segmentation of deformable motion},
	BookTitle = {Proc. 3rd IEEE Int. Conf. Image Processing},
	Pages = {937--940},
	Address = {Lausanne, Switzerland},
 	Month = {September},
	Year = {1996}
} 


@InProceedings{Kervrann96b, 
	Author = {Kervrann, C. and Heitz, F. and Pérez, P.},
	Title = {Statistical model-based estimation and tracking of non-rigid motion},
	BookTitle = {Proc. 13th Int. Conf. Pattern Recognition},
	Pages = {244--248},
	Address = {Vienna, Austria},
 	Month = {August},
	Year = {1996}
} 


@InProceedings{Kervrann96c, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Apprentissage non supervisé et suivi de modèles déformables dans une séquence d'images},
	BookTitle = {10eme Congrès AFCET Reconnaissance des Formes et Intelligence Artificielle (RFIA'96)},
	Pages = {559--568},
	Address = {Rennes},
 	Month = {January},
	Year = {1996}
} 


@InProceedings{Kervrann97a, 
	Author = {Kervrann, C. and Davoine, F. and Pérez, P. and Li, H. and Labit, C. and Forchheimer, R.},
	Title = {Generalized Likelihood Ratio-based face detection and extraction of mouth features},
	BookTitle = {Int. Conf. on Audio and Video-Based Biometric Person Authentication, AVBPA'97},
	Address = {Crans-Montana, Switzerland},
 	Month = {March},
	Year = {1997}
} 


@article{Kervrann97b, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {Modèles déformables statistiques pour l'analyse de structures 2{D} dans des séquences d'images},
	Journal = {Technique et Science Informatiques},
	Volume = {6},
	Number = {3},
	Pages = {325--354},
	Year = {1997}
} 


@article{Kervrann98a, 
	Author = {Kervrann, C. and Davoine, F. and Pérez, P. and Li, H. and Forcheimer, R. and Labit, C.},
	Title = {Generalized likelihood ratio-based face detection and extraction of mouth features},
	Journal = {Pattern Recognition Letters},
	Volume = {18},
	Number = {9},
	Pages = {899--912},
	Year = {1998}
} 


@article{Kervrann98b, 
	Author = {Kervrann, C. and Heitz, F.},
	Title = {A Hierarchical Markov Modeling Approach for the Segmentation and Tracking of Deformable Shapes},
	Journal = {Graphical Models and Image Processing},
	Volume = {60},
	Number = {3},
	Pages = {173--195},
	Month = {May},
	Year = {1998}
} 


@InProceedings{99DKLPFLiwsnhc3di, 
	Author = {Davoine, F. and Kervrann, C. and Li, H. and Pérez, P. and Forchheimer, R. and Labit, C.},
	Title = {On automatic face and facial features detection in video sequences},
	BookTitle = {Int. Workshop on Synthetic and Natural Hybrid Coding and $3D$ Imaging (IWSNHC3DI'97)},
	Address = {Rhodes},
 	Month = {September},
	Year = {1999}
} 


@InProceedings{Kervrann04a, 
	Author = {Kervrann, C. and Ba, S.},
	Title = {Approche Non-paramétrique en restauration d'image avec Préservation des discontinuités},
	BookTitle = {14ème Congrè Francophone AFRIF-AFIA de Reconnaissance des Formes et Intelligence Artificielle (RFIA'04)},
	Address = {Toulouse, France},
 	Month = {January},
	Year = {2004}
} 


@InProceedings{Kervrann04b, 
	Author = {Kervrann, C. and Trubuil, A.},
	Title = {An adaptive window approach for Poisson noise reduction and structure preserving in confocal microscopy},
	BookTitle = {International Symposium on Biomedical Imaging (ISBI'04)},
	Address = {Arlington, VA},
 	Month = {April},
	Year = {2004}
} 


@InProceedings{Kervrann04c, 
	Author = {Kervrann, C.},
	Title = {An adaptive window approach for image smoothing and structures preserving},
	BookTitle = {Proc. Eur. Conf. Computer Vision (ECCV'04},
	Address = {Prague, Czech Republic},
 	Month = {May},
	Year = {2004}
} 


@article{Kervrann04d, 
	Author = {Kervrann, C. and Leland, D. and Pardini, L.},
	Title = {Robust incremental compensation of the light attenuation with depth in 3D fluorescence microscopy},
	Journal = {J. Microscopy},
	Volume = {214},
	Number = {3},
	Pages = {297--314},
	Year = {2004}
} 


@InProceedings{Boulanger05a, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Approche statistique adaptative pour le filtrage de séquences d'images 3D de fluoroscopie},
	BookTitle = {Congrès Jeunes Chercheurs en Vision par Ordinateur (ORASIS'05)},
	Address = {Fournols, France},
 	Month = {May},
	Year = {2005}
} 


@InProceedings{Boulanger05b, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {An adaptive statistical method for 4d-fluorescence image sequence denoising with spatio-temporal discontinuities preserving},
	BookTitle = {Proceedings of Imaging for Medical and Life Sciences (IMVIE2)},
	Address = {Ilkirch, France},
 	Month = {March},
	Year = {2005}
} 


@InProceedings{Boulanger05c, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {An adaptive statistical method for denoising 4D fluoresence image sequences with preservation of spatio-temporal discontinuities},
	BookTitle = {Proc. Int. Conf. on Image Processing (ICIP'05) (2)},
	Pages = {145--148},
	Address = {Genova, Italy},
 	Month = {September},
	Year = {2005}
} 


@InProceedings{Boulanger05d, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Adaptive spatio-temporal restoration for 4D fluoresence microscopic imaging},
	BookTitle = {Int. Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI'05)},
	Pages = {893--901},
	Address = {Palm Springs, USA},
 	Month = {October},
	Year = {2005}
} 


@Misc{Kervrann05a, 
	Author = {Kervrann, Ch. and Boulanger, J. and Bouthemy, P.},
	Title = {Spatio-Temporal Analysis in 4D Video-Microscopy},
	Howpublished = {ERCIM News No.60, Special Theme: Biomedical Informatics},
	Month = {January},
	Year = {2005}
} 


@TechReport{Kervrann05b, 
	Author = {Kervrann, C. and Boulanger, J.},
	Title = {Local adaptivity to variable smoothness for exemplar-based image denoising and representation},
	Number = {5624},
	Institution = {INRIA},
	Month = {July},
	Year = {2005}
} 


@InProceedings{Boulanger06b, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Estimation of dynamic background for fluorescence video-microscopy},
	BookTitle = {Proc. IEEE Int. Conf. on Image Processing (ICIP'06)},
	Pages = {2509--2512},
	Address = {Atlanta, USA},
 	Month = {October},
	Year = {2006}
} 


@InProceedings{Boulanger06a, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Adaptive space-time patch-based method for image sequence restoration},
	BookTitle = {Proc. Int. Workshop on Statistical Methods in Multi-Image and Video Processing (SMVP'06)},
	Pages = {1--14},
	Address = {Graz, Austria},
 	Month = {May},
	Year = {2006}
} 


@InCollection{Boulanger06c, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {An adaptive statistical method for 4D-fluorescence image sequence denoising with spatio-temporal discontinuities preserving},
	BookTitle = {Biophotonics for Life Sciences and Medicine},
	editor = {Faugel, F. and Smigielski, P. and Brandenburg, A. and Fontaine, J.},
	Pages = {97--113},
	Publisher = {Fontis Media SA, Lausanne, Switzerland},
	Year = {2006}
} 


@TechReport{Boulanger06d, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Space-time adaptation for patch-based image sequence restoration},
	Number = {1798},
	Institution = {IRISA},
	Address = {Rennes, France},
 	Month = {April},
	Year = {2006}
} 


@InProceedings{Boulanger06e, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Simulation and estimation of fluorescence in microscopy image sequence},
	BookTitle = {Proc. MICCAI'06 workshop on microscopique image analysis and application to biology},
	Pages = {18--26},
	Address = {Copenhagen, Denmark},
 	Month = {October},
	Year = {2006}
} 


@InProceedings{Chessel06b, 
	Author = {Chessel, A. and Fablet, R. and Cao, F. and Kervrann, Ch.},
	Title = {Orientation interpolation and applications},
	BookTitle = {Proc. IEEE Int. Conf. on Image Processing (ICIP'06)},
	Pages = {1561--1564},
	Year = {2006}
} 


@InProceedings{Kervrann06a, 
	Author = {Kervrann, Ch. and Boulanger, J.},
	Title = {Unsupervised patch-based image regularization and representation},
	BookTitle = {Proc. European Conf. Comp. Vision (ECCV'06)},
	Volume = {3951 (LNCS)},
	Pages = {555--567},
	Address = {Graz, Austria},
 	Month = {May},
	Year = {2006}
} 


@article{Kervran06b, 
	Author = {Kervrann, Ch. and Boulanger, J.},
	Title = {Optimal spatial adaptation for patch-based image denoising},
	Journal = {IEEE Trans. on Image Processing},
	Volume = {15},
	Number = {10},
	Pages = {2866--2878},
	Year = {2006}
} 


@InProceedings{Kervran06c, 
	Author = {Kervrann, Ch. and Boulanger, J.},
	Title = {Adaptive estimation to variable smoothness for patch-based image denoising},
	BookTitle = {Proc. Annual Meeting of the Institute of Mathematical Statistics},
	Address = {Rio, Brazil},
 	Month = {August},
	Year = {2006}
} 


@InProceedings{Kervrann06d, 
	Author = {Kervrann, Ch. and Boulanger, J.},
	Title = {Adaptation locale optimale pour la régularisation et la représentation d'image à base de motifs locaux},
	Pages = {1--8},
	Address = {Tours},
 	Month = {January},
	Year = {2006}
} 


@InProceedings{Racine06a, 
	Author = {Racine, V. and Hertzog, A. and Jouanneau, J. and Salamero, J. and Kervrann, Ch. and B. Sibarita, J.},
	Title = {Multiple target tracking of {3D} fluorescent objects based on simulated annealing},
	BookTitle = {Proc. Int. Symp. on Biomedical Imaging (ISBI'06)},
	Pages = {1020--1023},
	Address = {Arlington, USA},
 	Month = {April},
	Year = {2006}
} 


@article{Boulanger07a, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Space-time adaptation for patch based image sequence restoration},
	Journal = {IEEE Trans. on Pattern Analysis and Machine Intelligence},
	Volume = {29},
	Number = {6},
	Pages = {1096--1102},
	Year = {2007}
} 


@InProceedings{Kervrann07a, 
	Author = {Kervrann, Ch. and Boulanger, J. and Coupé, P.},
	Title = {Bayesian non-local means filter, image redundancy and adaptive dictionaries for noise removal},
	BookTitle = {Proc. Conf. Scale-Space and Variational Meth. (SSVM' 07)},
	Pages = {520--532},
	Address = {Ischia, Italy},
 	Month = {June},
	Year = {2007}
} 


@InProceedings{Pecot07a, 
	Author = {Pécot, Th. and Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Network tomography for trafficking simulation and analysis in fluorescence microscopy imaging},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'07)},
	Pages = {268--271},
	Address = {Washington, D.C},
 	Month = {April},
	Year = {2007}
} 


@InProceedings{Pecot07b, 
	Author = {Pécot, Th. and Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Tomographie de réseau appliquée à la simulation et à l'analyse de trafic dans des séquences d'images de microscopie à fluorescence},
	BookTitle = {Proc. Colloque GRETSI},
	Pages = {1--4},
	Address = {Troyes, France},
 	Month = {September},
	Year = {0}
} 


@InProceedings{Boulanger08b, 
	Author = {Boulanger, J. and Sibarita, J.-B. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Non-parametric regression for patch-based fluorescence microscopy image sequence denoising},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'08)},
	Pages = {748--751},
	Address = {Paris, France},
 	Month = {May},
	Year = {2008}
} 


@InProceedings{Boulanger08c, 
	Author = {Boulanger, J. and Gidon, A. and Salamero, J. and Sibarita, J.-B. and Kervrann, Ch.},
	Title = {Repetitive and transient event detection in fluorescence video-microscopy},
	BookTitle = {Focus on Microscopy (FOM'08)},
	Address = {Osaka-Awaji, Japan},
 	Month = {April},
	Year = {2008}
} 


@InCollection{Boulanger08d, 
	Author = {Boulanger, J. and Pécot, Th. and Bouthemy, P. and Salamero, J. and Sibarita, J.-B. and Kervrann, Ch.},
	Title = {Simulation and estimation of intra-cellular dynamics and trafficking},
	BookTitle = {Microscopic Image Analysis for Life Science Applications},
	editor = {Wong, S. and Machiraju, R. and Rittscher, J.},
	Chapter= {7},
	Pages = {169--190},
	Publisher = {Artech Publishing House},
	Year = {2008}
} 


@TechReport{Boulanger08e, 
	Author = {Boulanger, J. and Kervrann, Ch. and Salamero, J. and Sibarita, J.-B. and Bouthemy, P.},
	Title = {Non-parametric regression for patch-based fluorescence microscopy image sequence denoisng},
	Number = {6651},
	Institution = {INRIA},
	Month = {September},
	Year = {2008}
} 


@InProceedings{Chessel08a, 
	Author = {Chessel, A. and Fablet, R. and Kervrann, Ch. and Cao, F.},
	Title = {Otolith image analysis by computer vision: extracting growth rings and recovering shape evolution of accretionnary structures},
	BookTitle = {Proc. Int. Conf. on Bio-inspired Systems and Signal Processing (BIOSIGNALS'08)},
	Volume = {2},
	Pages = {490--497},
	Address = {Funchal, Portugal},
 	Month = {January},
	Year = {2008}
} 


@InProceedings{Chessel08b, 
	Author = {Chessel, A. and Fablet, R. and Kervrann, Ch. and Cao, F.},
	Title = {Détection a contrario multi-modale de structures curvilinéaires},
	BookTitle = {Congrès Francophone de Reconnaissance des Formes et Intelligence Artificielle (RFIA'08)},
	Pages = {1--8},
	Address = {Amiens},
 	Month = {January},
	Year = {2008}
} 


@InProceedings{Chessel08c, 
	Author = {Chessel, A. and Boulanger, J. and Gasfou-Uzan, S. and Salamero, J. and Sibarita, J.-B. and Kervrann, Ch.},
	Title = {Processing fluorescence video microscopy by 1D temporal signal analysis},
	BookTitle = {European Light Microscopy Initiative meeting (ELMI'08)},
	Address = {Davos, Switzerland},
 	Month = {May},
	Year = {2008}
} 


@article{Coupe08a, 
	Author = {Coupé, P. and Hellier, P. and Prima, S. and Kervrann, Ch. and Barillot, Ch.},
	Title = {3D wavelet sub-bands mixing for image denoising},
	Journal = {International Journal of Biomedical Imaging},
	Volume = {8},
	Number = {3},
	Pages = {1--11},
	Year = {2008}
} 


@InProceedings{Coupe08b, 
	Author = {Coupé, P. and Hellier, P. and Kervrann, Ch. and Barillot, C.},
	Title = {Bayesian Non-Local Means-based speckle filtering},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'08)},
	Pages = {291--1294},
	Address = {Paris, France},
 	Month = {May},
	Year = {2008}
} 


@article{Coupe08c, 
	Author = {Coupé, P. and Yger, P. and Prima, S. and Hellier, P. and Kervrann, Ch. and Barillot, Ch.},
	Title = {An optimized blockwise Non-Local means denoising filter for 3D Magnetic Resonance Images},
	Journal = {IEEE Trans. on Medical Imaging},
	Volume = {27},
	Number = {4},
	Pages = {325--441},
	Year = {2008}
} 


@InProceedings{Kervrann08a, 
	Author = {Kervrann, Ch. and Pérez, P. and Boulanger, J.},
	Title = {Bayesian Non-local means, image redundancy and adaptive sstimation for image representation and applications},
	BookTitle = {SIAM Conf. on Imaging Science},
	Address = {San Diego, CA},
 	Month = {July},
	Year = {2008}
} 


@article{Kervrann08b, 
	Author = {Kervrann, Ch. and Boulanger, J.},
	Title = {Local adaptivity to variable smoothness for exemplar-based image denoising and representation},
	Journal = {International Journal of Computer Vision},
	Volume = {79},
	Number = {1},
	Pages = {45--69},
	Month = {August},
	Year = {2008}
} 


@InProceedings{Pecot08a, 
	Author = {Pécot, Th. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Network tomography-based tracking for intracellular traffic analysis in fluorescence microscopy imaging},
	BookTitle = {Proc. Int. Conf. on Bio-inspired Systems and Signal Processing (BIOSIGNALS'08)},
	Volume = {1},
	Pages = {154--161},
	Address = {Funchal, Portugal},
 	Month = {January},
	Year = {2008}
} 


@InProceedings{Pecot08b, 
	Author = {Pécot, Th. and Kervrann, Ch. and Bouthemy, P.},
	Title = {Minimal paths and probabilistic models for origin-destination traffic estimation in live cell imaging},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'08)},
	Pages = {843--846},
	Address = {Paris, France},
 	Month = {May},
	Year = {2008}
} 


@InProceedings{Pecot08c, 
	Author = {Pécot, Th. and Kervrann, Ch. and Bardin, S. and Goud, B. and Salamero, J.},
	Title = {Patch-based Markov models for event detection in fluorescence bioimaging},
	BookTitle = {Int. Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI'08)},
	Volume = {2},
	Pages = {95--103},
	Address = {New York City, USA},
 	Month = {September},
	Year = {2008}
} 


@InProceedings{Pecot08d, 
	Author = {Pécot, Th. and Kervrann, Ch.},
	Title = {Patch-based Markov models for change detection in image sequence analysis},
	BookTitle = {Proc. Int. Workshop on Local and Non-Local Approximation in Image Processing (LNLA'08)},
	Pages = {1--6},
	Address = {Lausanne, Switzerland},
 	Month = {August},
	Year = {2008}
} 


@InProceedings{Pecot08e, 
	Author = {Pécot, Th. and Kervrann, Ch. and Bouthemy, P. and Chessel, A. and Sibarita, J.-B. and Salamero, J. and Boulanger, J.},
	Title = {Network tomography and minimal paths for traffic flow estimation in time-lapse fluorescence microscopy},
	BookTitle = {European Light Microscopy Initiative meeting (ELMI'08)},
	Address = {Davos, Switzerland},
 	Month = {May},
	Year = {2008}
} 


@InProceedings{Blestel09a, 
	Author = {Blestel, S. and Kervrann, Ch. and Chrétien, D.},
	Title = {A Fourier-based method for detecting curved microtubule centers: application to straightening of cryo-electron microscope images},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'09)},
	Pages = {298--301},
	Address = {Boston, MA},
 	Month = {June},
	Year = {2009}
} 


@InProceedings{Blestel09b, 
	Author = {Blestel, S. and Chrétien, D. and Kervrann, Ch.},
	Title = {Segmentation of fibers in cryo-electron tomograms},
	BookTitle = {Colloque de la Société Francaise des Microscopies (SFmu'09)},
	Address = {Paris, France},
 	Month = {June},
	Year = {2009}
} 


@article{Boulanger09a, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P.},
	Title = {A simulation and estimation framework for intracellular dynamics and trafficking in video-microscopy and fluorescence imagery},
	Journal = {Medical Image Analysis},
	Volume = {13},
	Pages = {132--142},
	Year = {2009}
} 


@article{Cinquin10a, 
	Author = {Cinquin, B. and Chessel, A. and Gidon, A. and Bardin, S. and Pécot, Th. and Boulanger, J. and Kervrann, Ch. and Salamero, J.},
	Title = {Advanced microcopy to study trafficking and spatiotemporal organization of intracellular membranes},
	Journal = {Bio-Medical Materials and Engineering},
	Year = {2010}
} 


@article{Boulanger09b, 
	Author = {Boulanger, J. and Kervrann, Ch. and Bouthemy, P. and Elbau, P. and Sibarita, J.-B. and Salamero, J.},
	Title = {Patch-based non-local functional for denoising fluorescence microscopy image sequences},
	Journal = {IEEE Trans. on Medical Imaging},
	Volume = {29},
	Number = {2},
	Year = {2010}
} 


@InProceedings{Chessel09a, 
	Author = {Chessel, A. and Cinquin, B. and Bardin, S. and Salamero, J. and Kervrann, Ch.},
	Title = {Computational geometry-based scale-space and modal image decomposition: application to light video-microscopy imaging},
	BookTitle = {Conf. on Scale Space and Variational Methods (SSVM'09)},
	Pages = {770--781},
	Address = {Voss, Norway},
 	Month = {June},
	Year = {2009}
} 


@InProceedings{Chessel10a, 
	Author = {Chessel, A. and Cinquin, B. and Bardin, S. and Boulanger, J.and Salamero, J. and Kervrann, Ch.},
	Title = {A detection-based framework for the analysis of recycling in TIRF microsocopy},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'10)},
	Address = {Rotterdam, The Netherlands},
 	Month = {April},
	Year = {2010}
} 


@InProceedings{Chessel09b, 
	Author = {Chessel, A. and Pécot, Th. and Bardin, S. and Kervrann, Ch. and Salamero, J.},
	Title = {Evaluation of image sequences additive decomposition algorithms for membrane analysis in fluorescence video-microscopy},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'09)},
	Pages = {1099--1102},
	Address = {Boston, MA},
 	Month = {June},
	Year = {2009}
} 


@article{Coupe09a, 
	Author = {Coupé, P. and Hellier, P. and Kervrann, Ch. and Barillot, Ch.},
	Title = {NonLocal Means-based speckle filtering for ultrasound images},
	Journal = {IEEE Trans. on Image Processing},
	Volume = {18},
	Number = {10},
	Pages = {2221--2229},
	Year = {2009}
} 


@InProceedings{Guichard09a, 
	Author = {Guichard, P. and Tassin, A.M. and Blestel, S. and Kervrann, Ch. and Marco, S. and Chrétien, D.},
	Title = {Daughter centriole morphogenesis and structural details of isolated human centrosomes revealed by cryo-electron tomography},
	BookTitle = {Colloque de la Société Francaise des Microscopies (SFmu'09)},
	Address = {Paris, France},
 	Month = {June},
	Year = {2009}
} 


@InProceedings{Kervrann10a, 
	Author = {Kervrann, Ch.},
	Title = {Non-local means filter and novel bayesian approximations for non-local image regularization},
	BookTitle = {SIAM Conf. on Imaging Science},
	Address = {Chicago, Illinois},
 	Month = {April},
	Year = {2010}
} 


@InProceedings{Chessel10b, 
	Author = {Chessel, A. and Cinquin, B. and Waharte, F. and Kervrann, Ch. and Salamero, J.},
	Title = {A detection based framework for systematic analysis of dual color TIRF microscopy},
	BookTitle = {Focus on Microscopy (FOM'10)},
	Address = {Shanghai, China},
 	Month = {March},
	Year = {2010}
} 


@InProceedings{Blestel10a, 
	Author = {Blestel, S. and Fish, C.and Heichette, C. and Dupuys-Williams, P. and Chrétien, D. and Kervrann, Ch.},
	Title = {Electron cryo-tomography of microtubule assemblies: automatic segmentation of tomograms with CryoSeg},
	BookTitle = {EMBO Conference Series Microtubules - Structure, Regulation and Functions},
	Address = {Heidelberg, Germany},
 	Month = {June},
	Year = {2010}
} 


@InProceedings{Guesdon10a, 
	Author = {Guesdon, A. and Blestel, S. and Heichette, C. and Kervrann, Ch. and Chrétien, D.},
	Title = {Three dimensional reconstruction of 14 protofilaments GMPCPP-microtubules using TubuleJ},
	BookTitle = {EMBO Conference Series Microtubules - Structure, Regulation and Functions},
	Address = {Heidelberg, Germany},
 	Month = {June},
	Year = {2010}
} 


@InProceedings{Coquelle10a, 
	Author = {Coquelle, F. and Blestel, S. and Kinoshita, K. and Vitre, B. and Heichette, C. and Kervrann, Ch. and Arnal, I. and Chrétien, D.},
	Title = {Effects of XMAP215 on Microtubule Dynamics and Structure and its Visualization by Electron Cryo-Tomography},
	BookTitle = {EMBO Conference Series Microtubules - Structure, Regulation and Functions},
	Address = {Heidelberg, Germany},
 	Month = {June},
	Year = {2010}
} 


@InProceedings{Arnal10a, 
	Author = {Arnal, I. and Coquelle, F. and Blestel, S. and Vitre, B. and Heichette, C. and Kervrann, Ch. and Chrétien, D.},
	Title = {Structural basis of the interaction between microtubules and +TIPs},
	BookTitle = {EMBO Conference Series Microtubules - Structure, Regulation and Functions},
	Address = {Heidelberg, Germany},
 	Month = {June},
	Year = {2010}
} 


@InProceedings{Kervrann09a, 
	Author = {Kervrann, Ch. and Boulanger, J. and Pécot, Th. and Pérez, P.},
	Title = {Discriminant random field and patch-based redundancy analysis for image change detection},
	BookTitle = {Proc. IEEE Int. Workshop on Machine Learning for Signal Processing (MLSP'09)},
	Pages = {1--6},
	Address = {Grenoble, Fance},
 	Month = {September},
	Year = {2009}
} 


@InProceedings{Pecot09a, 
	Author = {Pécot, Th. and Chessel, A. and Bardin, S. and Salamero, J. and Bouthemy, P. and Kervrann, Ch.},
	Title = {Conditional random fields for object and background estimation in fluorescence video-microscopy},
	BookTitle = {Proc. IEEE Int. Symp. on Biomedical Imaging: from nano to macro (ISBI'09)},
	Pages = {734--737},
	Address = {Boston, MA},
 	Month = {June},
	Year = {2009}
}