Publications of Christian Barillot

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Books

1. Christian Barillot, David R. Haynor, Pierre Hellier. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 - Part I. Lecture Notes in Computer Science, Springer-Verlag, 2004.
2. Christian Barillot, David R. Haynor, Pierre Hellier. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 - Part II. Lecture Notes in Computer Science, Springer-Verlag, 2004.
3. Y. Bizais, C. Barillot, R. DiPaola. Information Processing in Medical Imaging. Computational Imaging and Vision, Kluwer Academic Publishers, Dordtrecht, The Netherlands, 1995.
4. Y. Bizais, C. Barillot, R. Di Paola. Information Processing in Medical Imaging. Y. Bizais, C. Barillot, R. Di Paola (ed.), Computational Imaging and Vision, Kluwer Academic Publishers,, 1995.

Academic Journals

1. C. Ciofolo, C. Barillot. Atlas-based segmentation of 3D cerebral structures with competitive level sets and fuzzy control. Medical Image Analysis, 13(3):456-470, 2009.
2. P. Coupé, P. Hellier, C. Kervrann, C. Barillot. NonLocal Means-based Speckle Filtering for Ultrasound Images. IEEE Transactions on Image Processing, 2009.
3. P. Coupé, P. Hellier, S. Prima, C. Kervrann, C. Barillot. 3D Wavelet Sub-Bands Mixing for Image Denoising. International Journal of Biomedical Imaging, 2008.
4. P. Coupé, P. Yger, S. Prima, P. Hellier, C. Kervrann, C. Barillot. An Optimized Blockwise Non Local Means Denoising Filter for 3D Magnetic Resonance Images. IEEE Transactions on Medical Imaging, 27(4):425-441, April 2008.
5. P. Coupé, P. Hellier, X. Morandi, C. Barillot. Probe Trajectory Interpolation for 3D Reconstruction of Freehand Ultrasound. Medical Image Analysis, 11(6):604-615, December 2007.
6. C. Barillot. The Increasing Influence of Medical Image Processing in Clinical Neuroimaging. Cellular and Molecular Biology, 52(6):31-38, 2006. download
7. C. Barillot, H. Benali, M. Dojat, A. Gaignard, B. Gibaud, S. Kinkingnehun, J. P. Matsumoto, M. Pelegrini-Issac, E. Simon, L. Temal. Federating Distributed and Heterogeneous Information Sources in Neuroimaging: The NeuroBase Project. Stud Health Technol Inform, 120:3-13, 2006. download
8. F. Rousseau, P. Hellier, M. Letteboer, W. Niessen, C. Barillot. Quantitative Evaluation of Three Calibration Methods for 3D Freehand Ultrasound. IEEE Transactions on Medical Imaging, 25(11):1492-1501, November 2006.
9. F. Rousseau, P. Hellier, C. Barillot. A Novel Temporal Calibration Method for 3-D Ultrasound. IEEE Transactions on Medical Imaging, 25(8):1108-1112, August 2006.
10. D. R. Haynor, C. Barillot, P. Hellier. A selection of papers from MICCAI 2004: the marriage of data and prior information (Editorial). Acad Radiol, 12(10):1229-31, 2005. download
11. C. Barillot, D.R. Haynor, P. Hellier. Medical Image Computing and Computer-Assisted Intervention (Editorial). Medical Image Analysis, 9(5):411-412, October 2005.
12. F. Rousseau, P. Hellier, C. Barillot. Confhusius: a robust and fully automatic calibration method for 3D freehand ultrasound. Medical Image Analysis, 9:25-38, October 2005.
13. P. Hellier, D.R. Haynor, C. Barillot. Medical Image Computing and Computer-Assisted Intervention (Editorial). Journal of Computer Assisted Surgery, 10(4):197-197, July 2005.
14. I. Corouge, M. Dojat, C. Barillot. Statistical shape modeling of low level visual area borders. Medical Image Analysis, 8(3):353-360, September 2004.
15. P. Hellier, C. Barillot. A hierarchical parametric algorithm for deformable multimodal image registration. Computer Methods and Programs in Biomedicine, 75(2):107-115, August 2004.
16. C. Barillot. Deformable registration for brain mapping in neuroimaging. Business Briefing, "Global Surgery 2003"(10):63-67, 2003. doc
17. P. Hellier, C. Barillot. Coupling dense and landmark-based approaches for non rigid registration. IEEE Transactions on Medical Imaging, 22(2):217-227, 2003.
18. I. Pratikakis, C. Barillot, P. Hellier, E. Mémin. Robust multiscale deformable registration of 3D ultrasound images. International Journal of Image and Graphics, 3(4):547-566, 2003.
19. I. Corouge, P. Hellier, B. Gibaud, C. Barillot. Interindividual functional mapping: a nonlinear local approach. NeuroImage, 19(4):1337-1348, August 2003.
20. P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher, D.L. Collins, A. Evans, G. Malandain, N. Ayache, G.E. Christensen, H.J. Johnson. Retrospective evaluation of inter-subject brain registration. IEEE Transactions on Medical Imaging, 22(9):1120-1130, February 2003.
21. C. Baillard, P. Hellier, C. Barillot. Segmentation of brain 3D MR images using level sets and dense registration. Medical Image Analysis, 5(3):185-194, 2001.
22. P. Hellier, C. Barillot, E. Mémin, P. Pérez. Hierarchical estimation of a dense deformation field for 3D robust registration. IEEE Transactions on Medical Imaging, 20(5):388-402, May 2001.
23. G. Le Goualher, A.M. Argenti, M. Duyme, W.F.C. Baare, H.E. Hulshoff Pol, C. Barillot, A.C. Evans. Statistical Sulcal Shape Comparisons: Application to the Detection of Genetic Encoding of the Central Sulcus Shape. Neuroimage, 11(5):564-574, 2000.
24. P. Hellier, C. Barillot, E. Mémin, P. Pérez. Estimation robuse 3D d'un champ de déformation pour le recalage non-linéaire inter-sujet d'images cérébrales. Traitement du Signal, 17(2):99-112, 2000.
25. G. Le Goualher, E. Procyk, L. Collins, R. Venegopal, C. Barillot, A. Evans. Automated extraction and variability analysis of sulcal neuroanatomy. IEEE Transactions on Medical Imaging, 18(3):206-217, 1999.
26. B. Gibaud, S. Garlatti, C. Barillot, E. Faure. Computerized brain atlases as decision support systems: a methodological approach. Artificial Intelligence in Medicine, 14(1):83-100, 1998.
27. B. Gibaud, S. Garlatti, C. Barillot, E. Faure. Computerised brain atlases as decision support systems: a methodological approach. Artificial Intelligence in Medicine, 14(0):83-100, 1998.
28. J. West, J.M. Fitzpatrick, M.Y. Wang, B.M. Dawant, C.R. Maurer, R.M. Kessler, R.J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P.A. van den Elsen, S. Napel, T.S. Sumanaweera, B. Harkness, P.F. Hemler, D.L.G. Hill, D.J. Hawkes, C. Studholme, J.B.A. Maintz, M.A. Viergever, G. Malandin, X. Pennec, M.E. Noz, G.Q. Maguire, M. Pollack, C.A. Pellizzari, R.A. Robb, D. Hanson, R. Woods. Comparison and Evaluation of Retrospective Intermodality Brain Image Registration Techniques. J. Computer Assisted Tomography, 21:554-566, 1997.
29. G. Le Goualher, C. Barillot, Y. Bizais. Three-dimensional segmentation and representation of cortical sulci using active ribbons. Int. J. of Pattern Recognition and Artificial Intelligence, 11(8):1295-1315, 1997.
30. G. Le Goualher, C. Barillot, Y. Bizais. Three-dimensional segmentation and representation of cortical sulci using active ribbons. International Journal of Pattern Recognition and Artificial Intelligence, 11(8):0-0, 1997.
31. J. West, J.M. Fitzpatrick, M.Y. Wang, B.M. Dawant, C.R. Maurer, R.M. Kessler, R.J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P.A. Van Den Elsen, S. Napel, T.S. Sumanaweera, B. Harkness, P.F. Hemler, D.L.G. Hill, D.J. Hawkes, C. Studholme, J.B.A. Maintz, M.A. Viergever, G. Malandain, X. Pennec, M.E. Noz, G.Q. Maguire, M. Pollack, C.A. Pellizzari, R.A. Robb, D. Hanson, R. Woods. Comparison and Evaluation of Retrospective Intermodality Brain Image Registration Techniques. Journal of Computer Assisted Tomography, 21(0):554-566, 1997.
32. D. Schwartz, E. Poiseau, D. Lemoine, C. Barillot. Registration of MEG/EEG data with 3D MRI : Methodology and precision issues. Brain Topography, 9(2):101-116, 1996. download
33. C. Barillot, J.C. Gee, L. Le Briquer, G. Le Goualher. Fusion Intra- et Inter-Individus en Imagerie Médicale Appliquée à la Modélisation Anatomique du Cerveau Humain. Traitement du Signal, 11(6):513-523, 1994.
34. Y. Rolland, D. Lemoine, A. Biraben, C. Barillot. Fusion of data. Multimodality in neurological imaging. Ann. Radiol, 36(6):375-380, 1993.
35. C. Barillot, D. Lemoine, L. Le Briquer, F. Lachmann, B. Gibaud. Data Fusion in Medical Imaging: Merging Multimodal and Multipatient Images, Identification of Structures and 3D Display Aspects. European Journal of Radiology, 17(1):22-27, 1993.
36. C. Barillot. Basic Principles of Surface and Volume Rendering Techniques to Display 3D Medical Data. IEEE Engineering in Medecine and Biology, 12(1):111-119, 1993.
37. J.P. Manens, G. Le Gall, F. Fresne, C. Barillot, B. Gibaud, D. Lemoine, A. Bouliou, C. Chenal, M. Ben Hassel, J.M. Scarabin. Irradiation multifaisceaux : plan de traitement assisté par ordinateur. Bull. cancer radiother, 78(3):327-336, 1991.
38. R.A. Robb, C. Barillot. Interactive Display and Analysis of 3-D Medical Images. IEEE Transactions on Medical Imaging, 8(3):217-226, 1989.
39. H.A. McCann, J.C. Sharp, T.M. Kinter, C.N. McEwan, C. Barillot, J.F. Greenleaf. Multidimensional Ultrasonic Imaging for Cardiology. Proceedings of the IEEE, 76(9):1063-1073, 1988.
40. C. Barillot, B. Gibaud, O. Lis, L.M. Luo, A. Bouliou, G. Le Certen, R. Collorec, J.L. Coatrieux. Computer Graphics in Medicine: A Survey. CRC Critical Reviews in Biomedical Engineering, 15(4):269-307, 1988.
41. C. Barillot, B. Gibaud, G. Le Certen, A. Bouliou, R. Collorec, S. Velut. 3-D Modeling and Computer Graphics: An Approach Directed to Teaching and Therapy Planning. ITBM, 8(1):121-132, 1987.
42. R. Renoulin, J.M. Scarabin, J.L. Coatrieux, J.C. Launay, G. Babonneau, B. Gibaud, D. Curet, G. Le Certen, B. Mahieddine, C. Islas Perrez, C. Barillot, Launay, F. Heuze. The Sirene project (medical archive automation). Bull. IDATE, 25:256-70, 1986.
43. B. Gibaud, C. Barillot, J.M. Scarabin. Photogrammétrie et Synthèse d'Images 3D pour la Représentation du Réseau Vasculaire Cérébral. Itbm, 6(2):159-166, 1985.
44. C. Barillot, B. Gibaud, J.M. Scarabin, J.L. Coatrieux. Three Dimensional Reconstruction of Cerebral Blood Vessels. IEEE Computer Graphics and Applications, 5(12):13-19, 1985.

Book Chapters

1. I. Corouge, P. Hellier, C. Barillot. From Global to Local Approaches for Non-Rigid Registration. In Medical Imaging Systems Technology: Methods in General Anatomy, C. T. Leondes (ed.), Vol. 265, World Scientific Publishing, Singapour, 2005.
2. C. Barillot, B. Gibaud, J.C. Gee, D. Lemoine. Segmentation and Fusion of Multimodality and Multi-Subjects Data for the Preparation of Neurosurgical Procedures, in Medical Imaging: Analysis of Multimodality 2D/3D Images. Vol. 19, Chap. 0, pp. 70-82, Studies in Health Technology and Informatics, IOS Press,, 1995.

International Conferences

1. Arnaud Le Guen, Jean-Yves Gauvrit, Jan Petr, Christian Barillot, Jean-Christophe Ferré. Optimization and reproducibility of brain arterial spin labeling sequence at 3 Tesla. In Proceedings of European Congress of Radiology (ECR 2010), Vienna, Austria, March 2010.
2. Jan Petr, Jean-Christophe Ferré, Jean-Yves Gauvrit, Christian Barillot. Improving arterial spin labeling by temporal filtering. In Proceedings of SPIE Medical Imaging 2010: Image Processing, Benoit M. Dawant, David R. Haynor (eds.), San Diego, USA, February 2010.
3. Jan Petr, Jean-Christophe Ferré, Jean-Yves Gauvrit, Christian Barillot. Denoising arterial spin labeling MRI using tissue partial volume. In Proceedings of SPIE Medical Imaging 2010: Image Processing, Benoit M. Dawant, David R. Haynor (eds.), San Diego, USA, February 2010.
4. J. Lecoeur, J.-C. Ferré, C. Barillot. Segmentation multimodale optimale par coupe de graphe multispectral : applications aux lésions de sclérose en plaques en IRM. In Actes de la 17ème conférence en Reconnaissance des Formes et Intelligence Artificielle (RFIA 2010), Caen, France, January 2010.
5. J. Lecoeur, J.-C. Ferré, C. Barillot. Optimized supervised segmentation of MS lesions from multispectral MRIs. In Proceedings of MICCAI workshop on Medical Image Analysis on Multiple Sclerosis (validation and methodological issues), 2009.
6. D. García-Lorenzo, J. Lecoeur, D.L. Arnold, D.L. Collins, C. Barillot. Multiple Sclerosis lesion segmentation using an automatic multimodal Graph Cuts. In Medical Image Computing and Computer Assisted Intervention, MICCAI'09, London, UK, 2009.
7. M. Descoteaux, N. Wiest-Daesslé, S. Prima, C. Barillot, R. Deriche, J.-F. Mangin, C. Poupon. NEX or no NEX? A high angular resolution diffusion imaging study. In 17$^th$ Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, ISMRM'09, Pages 0-0, Honolulu, USA, April 2009.
8. J. Lecoeur, J.-C. Ferré, D. L. Collins, S. Morrissey, C. Barillot. Multi Channel MRI Segmentation With Graph Cuts Using Spectral Gradient And Multidimensional Gaussian Mixture Model. In Proceedings of SPIE Medical Imaging 2009: Image Processing, J.-P. Pluim, B.-M. Dawant (eds.), Volume 7259, Orlando, USA, February 2009.
9. Meena Mani, Anuj Srivastava, Christian Barillot. The Labeling Of Cortical Sulci using Multidimensional Scaling. In , Pages 0-0, 2008.
10. D. García-Lorenzo, S. Prima, D. L. Collins, D. L. Arnold, C. Barillot, S. P. Morrissey. Multiple Sclerosis (MS) Brain segmentation combining robust Expectation Maximization (EM) and Mean Shift (MeS). In 25th Annual Meeting of the ESMRMB (2008 Congress), Valencia, Spain, October 2008. download
11. N. Wiest-Daesslé, S. Prima, P. Coupé, S.P. Morrissey, C. Barillot. Rician noise removal by non-local means filtering for low signal-to-noise ratio MRI: Applications to DT-MRI. In 11th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2008, D.N. Metaxas, L. Axel, G. Fichtinger, G. Székely (eds.), Lecture Notes in Computer Science, Pages 171-179, New York, USA, September 2008.
12. M. Descoteaux, N. Wiest-Daesslé, S. Prima, C. Barillot, R. Deriche. Impact of Rician adapted non-local means filtering on HARDI. In 11th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2008, D.N. Metaxas, L. Axel, G. Fichtinger, G. Székely (eds.), Lecture Notes in Computer Science, Pages 122-130, New York, USA, September 2008.
13. N. Wiest-Daesslé, S. Prima, J.-C. Ferré, J. Y. Gauvrit, G. Edan, C. Barillot, S.P. Morrissey. Automated DTI analysis of MS lesions and their contralateral regions of interest using the mid-sagittal plane as a reference. In MICCAI Workshop in Medical Image Analysis for Multiple Sclerosis (MIAMS), Pages 51-59, New York, USA, September 2008.
14. J. Lecoeur, S. Morissey, J.-C. Ferré, D. Arnold, D. Collins, C. Barillot. Multiple Sclerosis Lesions Segmentation using Spectral Gradient and Graph Cuts. In Proceedings of MICCAI workshop on Medical Image Analysis on Multiple Sclerosis (validation and methodological issues), September 2008.
15. D. García-Lorenzo, S. Prima, S. P. Morrissey, C. Barillot. A robust Expectation-Maximization algorithm for Multiple Sclerosis lesion segmentation. In IJ - 2008 MICCAI Workshop - MS Lesion Segmentation, New York, USA, September 2008. download
16. D. García-Lorenzo, S. Prima, D. L. Collins, D. L. Arnold, S. P. Morrissey, C. Barillot. Combining Robust Expectation Maximization and Mean Shift algorithms for Multiple Sclerosis Brain Segmentation. In MICCAI Workshop in Medical Image Analysis for Multiple Sclerosis (MIAMS), Pages 82-91, New York, USA, September 2008.
17. D. García-Lorenzo, S. Prima, L. Parkes, S. P. Morrissey J.-C. Ferré, C. Barillot. The impact of processing workflow in performance of automatic white matter lesion segmentation in Multiple Sclerosis. In MICCAI Workshop in Medical Image Analysis for Multiple Sclerosis (MIAMS), Pages 104-112, New York, USA, September 2008.
18. N. Wiest-Daesslé, S. Prima, L. Parkes, J.-C. Ferré, N. Roberts, J. Y. Gauvrit, G. Edan, C. Barillot, S. P. Morrissey. Automated DTI analysis of multiple sclerosis lesions and their contralateral regions of interest using the mid-sagittal plane as a reference - a comparison study of different automated image preprocessing methods. In 18th European Neurological Society Meeting, Nice, France, June 2008. download
19. D. García-Lorenzo, S. Prima, L. Parkes, J.-C. Ferré, N. Roberts, J. Y. Gauvrit, G. Edan, C. Barillot, S. P. Morrissey. Performance of automatic white matter lesion segmentation in multiple sclerosis depends on choice of image processing workflow. In 18th European Neurological Society Meeting, Nice, France, June 2008. download
20. D. García-Lorenzo, S. Prima, J.-C. Ferré, L. Parkes, J.-Y. Gauvrit, S. P. Morrissey, C. Barillot. Quantitative evaluation of intensity inhomogeneity correction algorithms for Multiple Sclerosis. In Computer Assisted Radiology and Surgery 2002, Volume 3, Pages 0-0, Barcelona, Spain, June 2008.
21. P. Coupé, P. Hellier, C. Kervrann, C. Barillot. Bayesian non local means-based speckle filtering. In 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2008, Paris, France, May 2008.
22. S. Duchesne, Y. Rolland, M. Verin, C. Barillot. Computer aided differential diagnosis in movement disorders using MRI morphometry. In SPIE Medical Imaging, N. Karssemeijer, M. L. Giger (eds.), San Diego, 2007.
23. N. Wiest-Daesslé, S. Prima, P. Coupé, S.P. Morrissey, C. Barillot. Non-local means variants for denoising of diffusion-weighted and diffusion tensor MRI. In 10th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2007, N. Ayache, S. Ourselin, A. Maeder (eds.), Lecture Notes in Computer Science, Volume 4792, Pages 344-351, Brisbane, Australia, October 2007.
24. C. Barillot, P. Coupé, O. El Ganaoui, B. Gibaud, P. Hellier, P. Jannin, P. Paul, S. Prima, N. Wiest-Daesslé, X. Morandi. Image guidance in neurosurgical procedures, the Visages point of view. In 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2007, Pages 1056-1059, Washington, USA, April 2007.
25. N. Wiest-Daesslé, S. Prima, S.P. Morrissey, C. Barillot. Validation of a new optimisation algorithm for registration tasks in medical imaging. In 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2007, Pages 41-44, Washington, USA, April 2007.
26. P. Coupé, P. Hellier, X. Morandi, C. Barillot. A probabilistic objective function for 3D rigid registration of intraoperative US and preoperative MR brain images. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Pages 1320-1323, April 2007.
27. N. Wiest-Daesslé, P. Yger, S. Prima, C. Barillot. Evaluation of a new optimisation algorithm for rigid registration of MRI data. In Proceedings of SPIE Medical Imaging 2007: Image Processing, I. Taylor (ed.), San Diego, USA, February 2007.
28. C. Ciofolo, C. Barillot. Shape analysis and fuzzy control for 3D segmentation of brain structures with level sets. In European Conference on Computer Vision - ECCV 2006, Ales Leonardis, Horst Bischof, Axel Pinz (eds.), Lecture Notes in Computer Science, Volume 3951, Pages 458-470, Graz, Austria, 2006.
29. S. Duchesne, M. Chakravarty, C. Barillot, D.L. Collins. Brainstem segmentation protocol. In Medical Image Computing and Computer Assisted Intervention - From Statistical Atlases to Personalized Models (Workshop), H. Delingette, A. F. Frangi (eds.), Copenhagen, Denmark, 2006.
30. P. Coupé, P. Yger, C. Barillot. Fast Non Local Means Denoising for 3D MR Images. In 9th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2006, R. Larsen, M. Nielsen, J. Sporring (eds.), Lecture Notes in Computer Science, Volume 4191, Pages 33-40, Copenhagen, Denmark, October 2006.
31. A. Ogier, P. Hellier, C. Barillot. Restoration of 3D medical images with total variation scheme on wavelet domains (TVW). San Diego, USA, February 2006.
32. B. Gibaud, C. Barillot, H. Benali, M. Dojat, A. Gaignard, S. Kinkingnéhun, J.P. Matsumoto, M. Pélégrini-Issac, E. Simon, L. Temal. Sharing data and image processing tools in neuroimaging. In Computer Assisted Radiology and Surgery, H.U. Lemke, M.W. Vannier, K. Inamura, A.G. Farman, K. Doi (eds.), Volume 1-S1, Pages 41-42,, 2006.
33. C. Barillot. Synopsis on Medical Signal Processing and Biomedical Imaging (invited editorial). In 2005 Yearbook of Medical Informatics: Ubiquitous Health Care Systems, R. Haux, C. Kulikowski (eds.), Stuttgart, Germany, 2005.
34. L.S. Aït-ali, S. Prima, P. Hellier, B. Carsin, G. Edan, C. Barillot. STREM: a robust multidimensional parametric method to segment MS lesions in MRI. In 8th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2005, J. Duncan, G. Gerig (eds.), Lecture Notes in Computer Science, Volume 3749, Pages 409-416, Palm Springs, USA, October 2005.
35. P. Coupé, P. Hellier, N. Azzabou, C. Barillot. 3D Freehand Ultrasound Reconstruction based on Probe Trajectory. In 8th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2005, J. Duncan, G. Gerig (eds.), Lecture Notes in Computer Science, Volume 3749, Pages 597-604, Palm Springs, USA, October 2005.
36. C. Ciofolo, C. Barillot. Brain Segmentation with Competitive Level Sets and Fuzzy Control. In 19th International Conference on Information Processing in Medical Imaging, IPMI'2005, G.E. Christensen, M. Sonka (eds.), Lecture Notes in Computer Science, Volume 3565, Pages 333-344, Glenwood Springs, USA, July 2005.
37. C. Barillot, L. Amsaleg, F. Aubry, J.P. Bazin, H. Benali, Y. Cointepas, I. Corouge, O. Dameron, M. Dojat, C. Garbay, B. Gibaud, P. Gros, S. Kinkingnéhun, G. Malandain, J.P. Matsumoto, D. Papadopoulos, M. Pelegrini, N. Richard, E. Simon. NeuroBase: gestion de données et de connaissances distribuées en neuroimagerie. In Journée spéciale du GDR STIC Santé-Inserm sur : Gestion de données et de traitements distribués en imagerie médicale, (ed.), Pages 0-0,, 2005.
38. B. Gibaud, M. Dojat, L. Temal, F. Aubry, H. Benali, O. Dameron, S. Kinkingnéhun, J.P. Matsumoto, M. Pélégrini-Issac, R. Valabregue, C. Barillot. NeuroBase: gestion de données et de connaissances distribuées en neuroimagerie. In Journée spéciale du GDR STIC Santé-Inserm sur : Gestion de données et de traitements distribués en imagerie médicale, (ed.), Pages 0-0,, 2005.
39. C Barillot, R Valabrègue, JP Matsumoto, F Aubry, H Benali, Y Cointepas, O Dameron, M Dojat, E Duchesnay, B Gibaud, S Kinkingnéhun, D Papadopoulos, M Pélégrini-Issac, E Simon. NeuroBase: Management of Distributed and Heterogeneous Information Sources in Neuroimaging. In DiDaMIC'04 Workshop. Satellite of the MICCAI conference (St-Malo, 26-29 September 2004), M Dojat, M Gibaud (eds.), Pages 85-94, Rennes, September 2004.
40. B Gibaud, M Dojat, F Aubry, H Benali, O Dameron, S Kinkingnéhun, JP Matsumoto, M Pélégrini-Issac, R Valabrègue, C Barillot. Towards an Ontology for Sharing Neuroimaging Data and Processing Tools: Experience Learned from the Development of a Demonstrator. In DiDaMIC'04 Workshop. Satellite of the MICCAI conference (St-Malo, 26-29 September 2004), M Dojat, M Gibaud (eds.), Pages 15-23, Rennes, September 2004.
41. C. Ciofolo, C. Barillot, P. Hellier. Combining fuzzy logic and level set methods for 3D MRI brain segmentation. In 2nd IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2004, Pages 161-164, Arlington, USA, April 2004.
42. A. Ogier, P. Hellier, C. Barillot. Speckle reduction on ultrasound image by variational methods and adaptive Lagrangian multipliers. In 2nd IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2004, Pages 547-550, Arlington, USA, April 2004.
43. B. Gibaud, M. Dojat, F. Aubry, H. Benali, O. Dameron, S. Kinkingnéhun, J.P. Matsumoto, M. Pélégrini-Issac, R. Valabregue, C. Barillot. Toward an ontology for sharing neuroimaging data and processing methods: experience learned from the development of a demonstrator. In Workshop DiDaMIC- Distributed Databases in Medical Image Computing, Rennes (France), (ed.), Volume, Pages 15-23,, 2004.
44. C. Barillot, R. Valabregue, J.P. Matsumoto, F. Aubry, H. Benali, Y. Cointepas, O. Dameron, M. Dojat, E. Duchesnay, B. Gibaud, S. Kinkingnéhun, D. Papadopoulos, M. Pélégrini-Issac, E. Simon. Management of Distributed and Heterogeneous Information Sources in Neuroimaging. In Workshop DiDaMIC- Distributed Databases in Medical Image Computing, Rennes (France), (ed.), Volume, Pages 85-94,, 2004.
45. F. Rousseau, R. Fablet, C. Barillot. Robust Statistical Registration of 3D Ultrasound Images Using Texture Information. In IEEE Int. Conf. on Image Processing, ICIP'03, Barcelona, Spain, 2003.
46. I. Corouge, M. Dojat, C. Barillot. Statistical Shape Modeling of Unfolded Retinotopic Maps for a Visual Areas Probabilistic Atlas. In Medical Image Computing and Computer Assisted Intervention, MICCAI'03, Lecture Notes in Computer Sciences, Montreal, Canada, 2003.
47. C. Barillot, L. Amsaleg, F. Aubry, J.-P. Bazin, H. Benali, Y. Cointepas, I. Corouge, O. Dameron, M. Dojat, C. Garbay, B. Gibaud, P. Gros, S. Kinkingnéhun, G. Malandain, J. Matsumoto, D. Papadopoulos, M. Pélégrini, N. Richard, E. Simon. Neurobase : Gestion de données et de connaissances distribuées en Neuroimagerie. In Journée Web semantique, Pages 0-0, Rennes, FRANCE, 2003.
48. C. Barillot, L. Amsaleg, F. Aubry, J.-P. Bazin, H. Benali, Y. Cointepas, I. Corouge, O. Dameron, M. Dojat, C. Garbay, B. Gibaud, P. Gros, S. Kinkingnéhun, G. Malandain, J. Matsumoto, D. Papadopoulos, M. Pélégrini, N. Richard, E. Simon. Neurobase: Management of distributed knowledge and data bases in neuroimaging. In Human Brain Mapping, Volume 19, Pages 0-0, New-York, NY, 2003.
49. F. Rousseau, P. Hellier, C. Barillot. Robust and automatic calibration method for 3D freehand ultrasound. In 6th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2003, R.E. Ellis, T.M. Peters (eds.), Lecture Notes in Computer Science, Volume 2879, Pages 440-448, Montreal, Canada, November 2003. download
50. C. Barillot, L. Amsaleg, F. Aubry, J.P. Bazin, H. Benali, Y. Cointepas, I. Corouge, O. Dameron, M. Dojat, C. Garbay, B. Gibaud, P. Gros, S. Kinkingnéhun, G. Malandain, J.P. Matsumoto, D. Papadopoulos, M. Pelegrini, N. Richard, E. Simon. NeuroBase: management of distributed knowledge and data bases in neuroimaging. In Human Brain Mapping 2003, (ed.), Pages 0-0,, 2003.
51. C. Barillot, L. Amsaleg, F. Aubry, J.P. Bazin, H. Benali, Y. Cointepas, I. Corouge, O. Dameron, M. Dojat, C. Garbay, B. Gibaud, P. Gros, S. Kinkingnéhun, G. Malandain, J.P. Matsumoto, D. Papadopoulos, M. Pelegrini, N. Richard, E. Simon. NeuroBase: gestion de données et de connaissances distribuées en neuroimagerie. In Journée Web Sémantique Médical 2003, (ed.), Pages 0-0,, 2003.
52. I. Corouge, C. Barillot. Statistical modeling of pairs of sulci in the context of neuroimaging probabilistic atlas. In Medical Image Computing and Computer-Assisted Intervention - MICCAI 2002, R. Kikinis, R. Ellis, T. Dohi (eds.), Lecture Notes in Computer Sciences, Volume LNCS-2489, Pages 655-662, Tokyo, 2002.
53. C. Barillot. Non Rigid Registration in Neuroimaging: from a Retrospective Evaluation of Global Approaches to New Advances in Local and Hybrid Methods. IEEE Int. Symp. on Biomedical Imaging (ed.), Washington D.C, 2002.
54. P. Hellier, J. Ashburner, I. Corouge, C. Barillot, K.J. Friston. Inter subject registration of functional and anatomical data using SPM. In 5th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2002, Lecture Notes in Computer Science, Volume 2489, Pages 590-597, Tokyo, Japan, September 2002. download
55. F. Rousseau, P. Hellier, C. Barillot. A fully automatic calibration procedure for freehand 3D ultrasound. In 1st IEEE International Symposium on Biomedical Imaging: Macro to Nano, ISBI'2002, Pages 985-988, Washington, USA, July 2002. download
56. C. Barillot, P. Hellier, I. Corouge. Non rigid registration in neuroimaging: from a retrospective evaluation of global approaches to new advances in local and hybrid methods. In 1st IEEE International Symposium on Biomedical Imaging: Macro to Nano, ISBI'2002, Pages 469-472, Washington, USA, June 2002. download
57. I. Corouge, C. Barillot. Utilisation d'un modèle probabiliste de formes pour le recalage non-linéaire de données 3D éparses. In Journées francophones des jeunes chercheurs en analyse d'images et perception visuelle, ORASIS'2001, Pages 145-154, Cahors, 2001.
58. I. Corouge, C. Barillot. Use of a probabilistic shape model for non-linear registration of 3D scattered data. In IEEE Int. Conf. on Image Processing, ICIP'2001, Pages 149-152, Thessaloniki, Greece, 2001.
59. C. Barillot. Deformable Registration. International Conference on Information Processing in Medical Imagin - IPMI'01 (ed.), Davis, CA, 2001.
60. C. Barillot. Linear Versus Non-Linear Registration of Brainscans - What can we Expect? Some Evaluation Issues. International Conference, Schloss Dagstuhl, Wadern, Germany Research Center for Computer Science (eds.), Wadern, Germany, 2001. download
61. I. Corouge, C. Barillot, P. Hellier, P. Toulouse, B. Bibaud. Non-linear local registration of functional data. In 4th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2001, W.J. Niessen, M.A. Viergever (eds.), Lecture Notes in Computer Science, Volume 2208, Pages 948-956, Utrecht, The Netherlands, October 2001. download
62. P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher, D.L. Collins, A. Evans, G. Malandain, N. Ayache. Retrospective evaluation of inter-subject brain registration. In 4th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2001, W.J. Niessen, M.A. Viergever (eds.), Lecture Notes in Computer Science, Volume 2208, Pages 258-265, Utrecht, The Netherlands, October 2001. download
63. I. Pratikakis, C. Barillot, P. Hellier. Robust multi-scale non-rigid registration of 3D ultrasound images. In 3rd International Conference on Scale-Space and Morphology in Computer Vision, Scale-Space'2001, M. Kerckhove (ed.), Lecture Notes in Computer Science, Volume 2106, Pages 389-397, Vancouver, Canada, July 2001. download
64. I. Corouge, P. Hellier, P. Toulouse, B. Bibaud, C. Barillot. A new inter-individual functional mapping scheme based on a local non linear registration method. In 7th International Conference on Functional Mapping of the Human Brain, HBM'2001, Brighton, UK, June 2001.
65. P. Hellier, C. Barillot. Cooperation between local and global approaches to register brain images. In 17th International Conference on Information Processing in Medical Imaging, IPMI'2001, M.F. Insana, R.M. Leahy (eds.), Lecture Notes in Computer Science, Volume 2082, Pages 315-328, Davis, USA, June 2001. download
66. C. Baillard, C. Barillot. Robust 3D Segmentation of Anatomical Structures with Level Sets. In Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Sciences, Volume lncs-1935, Pages 236-245, Pittsburgh, PA, 2000.
67. P. Hellier, C. Barillot. Multimodal non-rigid warping for correction of distortions in functional MRI. In 3rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2000, S.L. Delp, A.M. DiGioia, B. Jaramaz (eds.), Lecture Notes in Computer Science, Volume 1935, Pages 512-521, Pittsburgh, USA, October 2000. download
68. C. Baillard, P. Hellier, C. Barillot. Cooperation between level set techniques and dense 3D registration for the segmentation of brain structures. In 15th International Conference on Pattern Recognition, ICPR'2000, Volume 1, Pages 991-994, Barcelona, Spain, September 2000.
69. C. Baillard, P. Hellier, C. Barillot. Segmentation of 3D brain structures using level sets and dense registration. In IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA'2000, B. Kimia, A. Amini, D. Metaxas (eds.), Pages 94-103, Hilton Head Island, USA, June 2000.
70. P. Hellier, C. Barillot, E. Mémin, P. Pérez. An energy-based framework for dense 3D registration of volumetric brain image. In IEEE Conference on Computer Vision and Pattern Recognition, CVPR'2000, B. Kimia, A. Amini, D. Metaxas (eds.), Volume 2, Pages 270-275, Hilton Head Island, USA, June 2000.
71. P. Jannin, D. Schwartz, C. Grova, C. Barillot, B. Gibaud. Fusion of multimodal functional neuro-imaging (MEG, fMRI, SPECT): definition of different matching paradigms. In Computer Assisted Radiology & Surgery, H.U. Lemke, M.W. Vannier, K. Inamura, A.G. Farman (eds.), Pages 238-243, Paris, 1999.
72. C. Barillot. Anatomical and Functional Image Fusion in Brain Imaging, 1st Annual Symposium for the Centre for Vascular Imaging Research on Virtual Reality in Vascular Medicine, John P. Robarts Research Institute, University of Western Ontario. 1999.
73. P. Hellier, C. Barillot, E. Mémin, P. Pérez. Medical image registration with robust multigrid techniques. In 2nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'99, C. Taylor, A.C.F. Colchester (eds.), Lecture Notes in Computer Science, Volume 1679, Pages 680-687, Cambridge, UK, September 1999.
74. C. Barillot, G. Le Goualher, P. Hellier, B. Gibaud. Statistical analysis of brain sulci based on active ribbon modeling. In SPIE Medical Imaging 1999: Image Processing, K.M. Hanson (ed.), Volume 3661, Pages 312-321, San Diego, USA, February 1999.
75. P. Jannin, D. Schwartz, C. Grova, C. Barillot, B. Gibaud. Fusion of multimodal functional neuro-imaging (MEG, fMRI, SPECT): definition of different matching paradigms. In Computer Assisted Radiology & Surgery 1999, Paris, H.U. Lemke, M.W. Vannier, K. Inamura, A.G. Farman (eds.), Volume, Pages 238-243,, 1999.
76. X. Morandi, D.P. Schwartz, B. Godey, G. Le Goualher, C. Barillot, J.M. Scarabin, B. Gibaud. MEG mapping of language-related cortex: a preliminary study. In Functional Mapping of the Human Brain, T. Paus, A. Gjedde, A. Evans (eds.), NeuroImage, Volume 7(4), Pages 0-0, Montreal, QC, 1998.
77. G. Le Goualher, R. Torre, L. Collins, C. Barillot, A.C. Evans. Automatic Identification of Cortical Sulci using 3D Probabilistic Atlas. In Medical Image Computing and Computer-Assisted Intervention -MICCAI'98, W.M. Wells, A. Colchester, S. Delp (eds.), Lecture Notes in Computer Sciences, Volume 1496, Pages 509-518, Boston, MA, 1998.
78. G. Le Goualher, R. Torre, L. Collins, C. Barillot, A. Evans. Automated extraction and variability analysis of sulcal neuroanatomy. In Functional Mapping of the Human Brain, Workshop on Statistics of Brain Mapping, Montreal, QC, 1998.
79. C. Barillot. Data Fusion of MEG and MRI data. In Working group in Neuroinformatics and Computatioal Neurosciences of the EC Esprit Program, Workshop on Neurofunctional Images of the Human Brain, Sophia Antipolis, France, 1998.
80. C. Barillot. Scientific Basis, techniques and limitations of image fusion. In Symposium on Functional Imaging and Image Guided Surgery, Seeheim, Germany, 1998.
81. C. Barillot, D.P. Schwartz, G. le Goualher, X. Morandi, B. Gibaud. Merging 3D cortical sulci models with 3D representations of MEG data. In Functional Mapping of the Human Brain, T. Paus, A. Gjedde, A. Evans (eds.), NeuroImage, Volume 7(4), Pages 0-0, Montreal, QC, 1998.
82. C. Barillot, S. Champmartin, G.G. le, B. Gibaud. Probabilistic modeling of brain sulci based on statistical analysis of 3D surfaces. In Functional Mapping of the Human Brain, T. Paus, A. Gjedde, A. Evans (eds.), NeuroImage, Volume 7(4), Pages 0-0, Montreal, QC, 1998.
83. C. Barillot, B. Gibaud, G. Le Goualher, X. Morandi. Représentation mixte numérique/symbolique de sillons corticaux. In Reconnaissance des Formes et Intelligence Artificielle (RFIA), Volume 3, Pages 165-174, Clermont-Ferrand, 1998.
84. C. Barillot, B. Gibaud, G. Le Goualher, X. Morandi. Représentation mixte numérique/symbolique des sillons corticaux. In Congrès RFIA 98, Clermont-Ferrand, (ed.), Volume III, Pages 165-174,, 1998.
85. C. Barillot, S. Champmartin, G. Le Goualher, B. Gibaud. Probabilistic modeling of brain sulci based on statistical analysis of 3D surfaces. In 4th International Conference on functional mapping of the human brain, Montréal (Canada), (ed.), Pages 0-0,, 1998.
86. C. Barillot, D. Schwartz, G. Le Goualher, X. Morandi, B. Gibaud. Merging 3D cortical sulci models with 3D representations of MEG data. In 4th International Conference on functional mapping of the human brain, Montréal (Canada), (ed.), Pages 0-0,, 1998.
87. X. Morandi, D. Schwartz, B. Godey, G. Le Goualher, C. Barillot, J.M. Scarabin, B. Gibaud. MEG mapping of language-related cortex: a preliminary study. In 4th International Conference on functional mapping of the human brain, Montréal (Canada), (ed.), Pages 0-0,, 1998.
88. P. Jannin, A. Bouliou, J.M. Scarabin, C. Barillot, J. Lüber. Visual Matching between real and virtual images in image guided surgery. In Medical Imaging : Image Capture and Display, 1997.
89. B. Gibaud, G. Le Goualher, C. Barillot, D. Schwartz, X. Morandi, J.M. Scarabin. Setting up of a database for the description of brain cortical structures. In Computer Assisted Radiology, H. U. Lemke, M. W. Vannier, K. Inamura (eds.), Pages 559-564, 1997.
90. B. Gibaud, S. Garlatti, C. Barillot, E. Faure. Methodology for the design of Digital Brain Atlases. In Artificial Intelligence in Medicine, E. Keravnou, C. Garbay, R. Baud, J. Wyatt (eds.), Lecture Notes in Artificial Intelligence, Volume LNCS-1211, Pages 441-452, Berlin-Heidelberg, 1997.
91. B. Gibaud, S. Garlatti, C. Barillot, E. Faure. Methodology of design of digital brain atlasses. In Artificial Intelligence in Medicine (AIME 97), Grenoble, Lecture Notes in Artificial Intelligence, E. Keravnou, C. Garbay, R. Baud, J. Wyatt (eds.), Volume 1211, Pages 441-452,, 1997.
92. B. Gibaud, G. Le Goualher, C. Barillot, D. Schwartz, X. Morandi, J.M. Scarabin. Setting up of a database for the description of brain cortical structures. In Computer Assisted Radiology 1997, H.U. Lemke, M.W. Vannier, K. Inamura (eds.), Volume, Pages 559-564,, 1997.
93. P. Jannin, A. Bouliou, J.M. Scarabin, C. Barillot, J. Luber. Visual Matching between real and virtual images in image guided neurosurgery. In Medical Imaging, New Port Beach, H.U. Lemke, M.W. Vannier, K. Inamura (eds.), Volume 3031, Pages 518-526,, 1997.
94. J. West, J.M. Fitzpatrick, M.Y. Wang, B.M. Dawant, C.R. Maurer, R.M. Kessler, R.J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P.A. van den Elsen, P.F. Hemler, S. Napel, T.S. Sumanaweera, B. Harkness, D.L.G. Hill, C. Studholme, G. Malandin, X. Pennec, M.E. Noz, G.Q. Maguire, M. Pollack, C.A. Pellizzari, R.A. Robb, D. Hanson, R. Woods. Comparison and Evaluation of Retrospective Intermodality Image Registration Techniques. In Medical Imaging : Image Processing, Volume 2710, Pages 332-347, 1996.
95. G. Le Goualher, C. Barillot, Y. Bizais, J.M. Scarabin. 3D Segmentation of Cortical Sulci Using Active Models. In Medical Imaging : Image Processing, Volume 2710, Pages 254-263, 1996.
96. S. Garlatti, E. Montabord, B. Gibaud, C. Barillot. Base de Connaissances Intensionnelle avec Perspectives et Héritage Multiple. In Reconnaissance des Formes et Intelligence Artificielle (RFIA), Pages 495-504, Rennes, 1996.
97. D.L. Collins, G.G. le, R. Venugopal, A. Caramanos, A.C. Evans, C. Barillot. Cortical Constraints for Non-Linear Cortical Registration. In Visualization in Biomedical Computing, K. H. Höhne, R. Kikinis (eds.), Lecture Notes in Computer Sciences, Volume 1131, Pages 307-316, Berlin-Heidelberg, 1996.
98. C. Barillot, D. Schwartz, G. Le Goualher, B. Gibaud, J.M. Scarabin. Representation of MEG/EEG data in a 3D Morphological Environment. In Computer Assisted Radiology, H. U. Lemke, K. Inamura, M. W. Vannier, A. G. Farman (eds.), Pages 249-254, 1996.
99. D.L. Collins, G. Le Goualher, R. Venugopal, A. Caramanos, A.C. Evans, C. Barillot. Cortical Constraints for Non-Linear Cortical Registration. In Lecture Notes in Computer Sciences: Visualization in Biomedical Computing, K.H. Hohne, R. Kikinis (eds.), Volume 1131, Pages 307-316, Berlin-Heidelberg, 1996.
100. J. West, J.M. Fitzpatrick, M.Y. Wang, B.M. Dawant, C.R. Maurer, R.M. Kessler, R.J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P.A. Van Den Elsen, P.F. Hemler, S. Napel, T.S. Sumanaweera, B. Harkness, D.L.G. Hill, C. Studholme, G. Malandain, X. Pennec, M.E. Noz, G.Q. Maguire, M. Pollack, C.A. Pellizzari, R.A. Robb, D. Hanson, R. Woods. Comparison and Evaluation of Retrospective Intermodality Image Registration Techniques. In Medical Imaging: Image Processing, (ed.), Volume 2710, Pages 332-347,, 1996.
101. G. Le Goualher, C. Barillot, Y. Bizais, J.M. Scarabin. 3D Segmentation of Cortical Sulci Using Active Models. In Medical Imaging: Image Processing, (ed.), Volume 2710, Pages 254-263,, 1996.
102. C. Barillot, D. Schwartz, G. Le Goualher, B. Gibaud, J.M. Scarabin. Representation of MEG/EEG data in a 3D morphological environment. In Computer Assisted Radiology 96, H.U. Lemke, M.W. Vannier, K. Inamura, A.G. Farman (eds.), Volume, Pages 249-254,, 1996.
103. S. Garlatti, E. Montabord, B. Gibaud, C. Barillot. Base de connaissances intensionnelle avec perspectives et héritage multiple. In Congrès RFIA 96, Rennes, (ed.), Volume, Pages 495-503,, 1996.
104. B. Gibaud, C. Barillot, G. Le Goualher, J.M. Scarabin. ATLAS-based image segmentation: Survey of european works. In Workshop on Digital Brain Anatomy, Second Conference of the European Federation of Neurological Societies, Rome, (Italy), (ed.), Pages 0-0,, 1996.
105. B. Gibaud, C. Barillot, S. Garlatti, E. Montabord, J.H. Yapi, A. Lasquellec, G. Le Goualher, L. Collins, J.M. Scarabin. Méthodologie de conception et d'utilisation des atlas informatiques du cerveau. In Communication au GDR-PRC 134, Traitement du Signal et des Images (Projet Imagerie Cérébrale), ENST Paris, (ed.), Pages 0-0,, 1996.
106. C. Barillot, B. Gibaud, S. Garlatti, E. Montabord, J.H. Yapi, A. Lasquellec, G. Le Goualher, L. Collins, J.M. Scarabin. Système d'information pour la gestion de connaissances et de données anatomiques sur le cerveau. In Communication au PRC-GDR ISIS & CHM,ENST Paris, (ed.), Pages 0-0,, 1996.
107. E. Montabord, B. Gibaud, C. Barillot. HYPER-YAKA: Hypermedia et Base de Connaissance sensible au Contexte. In Langages et Modèles à Objets, Pages 153-171, 1995.
108. G. Le Goualher, C. Barillot, L. Le Briquer, J.C. Gee, Y. Bizais. 3D Detection and Representation of Cortical Sulci. In Computer Assisted Radiology, H. U. Lemke, K. Inamura, C. C. Jaffe, R. Felix (eds.), Pages 234-240, 1995.
109. J.C. Gee, B.L. le, C. Barillot, D.R. Haynor, R. Bajcsy. Bayesian Approach to the Brain Image Matching Problem. In Medical Imaging : Image Processing, Volume 2434, Pages 154-156, 1995.
110. J.C. Gee, L. Le Briquer, C. Barillot, D.R. Haynor. Probabilistic Matching of Brain Images. In Information Processing in Medical Imaging, Y. Bizais, C. Barillot, DiPaola R. (eds.), Computational Imaging and Vision, Volume 3, Pages 113-126, 1995.
111. S. Garlatti, E. Montabord, B. Gibaud, C. Barillot. A Methodological Approach for Object Knowledge Bases. In Research and developement in Expert Systems XII, M. A. Bramer, J. L. Nealon, R. Milne (eds.), Pages 201-214, 1995.
112. C. Barillot, B. Gibaud, J.C. Gee, D. Lemoine. Segmentation and Fusion of Multimodality and Multi-Subjects Data for the Preparation of Neurosurgical Procedures. In Medical Imaging: Analysis of Multimodality 2D/3D Images, L. Beolchi, M. H. Kuhn (eds.), Studies in Health Technology and Informatics, Volume 19, Pages 70-82, 1995.
113. E. Montabord, S. Garlatti, B. Gibaud, C. Barillot. Interaction between a Hypermedia and a Knowledge Base for the Management of a Knowledge System about the Brain. In Int. Conf. on Neural Network and Expert Systems, Plymouth, U.K, 1994.
114. D. Lemoine, E. Lussot, D. Liegeard, C. Barillot. Multimodal Registration system for the fusion of MRI, CT, MEG and 3D or steretactic angiographic Data. In Medical Imaging : Image Capture, Formatting, and Display, Volume 2164, Pages 46-57, 1994.
115. I. Kanellos, S. Garlatti, B. Gibaud, C. Barillot. The Atlas Project: A joint Industrial and Scientific Development under the Cognitive Paradigm of Information Processing. In 1st Eur. Conf. on Cognitive Science in Industry, Pages 451-466, Luxembourg, 1994.
116. J.C. Gee, C. Barillot, L. Le Briquer, D.R. Haynor, R. Bacjsy. Matching Structural Images of the Human Brain using Statistical and Geometrical Image Features. In Visualization in Biomedical Computing, R. A. Robb (ed.), Volume 2359, Pages 191-204, Rochester MN, 1994.
117. S. Garlatti, I. Kanellos, E. Montabord, C. Barillot, B. Gibaud. YAKA: un Système d'Information Intensionel sur le Cerveau Humain. In Informatique des organisations et Systèmes d'Information et de Décision (INFORSID), Pages 323-338, Aix en Provence, 1994.
118. C. Barillot. Segmentation and Fusion of Multimodality and Multi-Subjects Data for the Preparation of Neurosurgical Procedures. In Workshop CEE - AIMCOM, Medical Imaging: Analysis of Multimodality 2D/3D Images, Bruxelles, 1994.
119. C. Barillot, B. Gibaud, E. Montabord, S. Garlatti, I. Kanellos. An Information System to Manage Anatomical Knowledge and Image Data about Brain. In Visualization in Biomedical Computing, R. A. Robb (ed.), Volume 2359, Pages 424-434, Rochester MN, 1994.
120. C. Barillot, D. Lemoine, L. le Briquer, F. Lachmann, B. Gibaud. Data Fusion in Medical Imaging: Merging Multimodal and Multipatient Images, Identification of Structures and 3D Display Aspects. In Advanced Communications in Health Care, Bemmel J. H. Van, McCray A.T (eds.), IMIA Yearbook of Medical Informatics, Pages 290-295, 1994.
121. E. Montabord, B. Gibaud, C. Barillot, S. Garlatti, I. Kanellos, B.S. Wu, A. Biraben, X. Morandi. An Hypermedia System to Manage Anatomical Knowledge about Brain. In Computer Assisted Radiology, H. U. Lemke, K. Inamura, C. C. Jaffe, R. Felix (eds.), Pages 414-419, 1993.
122. L. Le Briquer, F. Lachmann, C. Barillot. Using local extremum curvatures to extract anatomical landmarks from medical images. In Medical Imaging : Image Processing, Volume 1898, Pages 549-558, 1993.
123. C. Barillot, D. Lemke. Integrated Medical Imaging: Data Fusion. In European Congress of Radiology, Integrated Medical Imaging: Communication, User Interfaces, Multimodal Image Registration, Pages 0-0, Vienna, Austria, 1993.
124. F. Lachmann, C. Barillot. Brain tissue classification from MRI data by means of texture analysis. In Medical Imaging VI: Image Processing, Volume 1652, Pages 72-83, 1992.
125. C. Barillot. Interactive Volume Rendering using Ray-Tracing for 3-D Medical Imaging. In Medical Images-Formation- Handling and Evaluation, A. E. Todd-Pokropek, M. A. Viergever (eds.), NATO ASI Series F-Computer and Systems Sciences, Volume 98, Pages 331-341, Berlin Heidelberg, 1992.
126. D. Lemoine, C. Barillot, B. Gibaud, E. Pasqualini. A 3D C1 Stereotactic Deformation Model to Merge Multimodality Images and Atlas Data. In Computer Assisted Radiology, H. U. Lemke (ed.), Pages 663-668, Berlin, 1991.
127. D. Lemoine, C. Barillot, B. Gibaud, E. Pasqualini. An Anatomical-based 3D Registration System of Multimodality and Atlas Data in Neurosurgery. In Information Processing in Medical Imaging, A. C. F. Colchester, D. J. Hawkes (eds.), Lecture Notes in Computer Sciences, Volume 511, Pages 154-164, Berlin Heidelberg, 1991.
128. F. Lachmann, C. Barillot. Segmentation de structures cérébrales à partir d'une base de données 3D IRM. In Séminaire ORASIS, Pages 101-104, St Malo (35), 1991.
129. F. Fresne, G. Le Gall, C. Barillot, B. Gibaud, et al.. A Stereotactic Multibeam Radiation Therapy System in a PACS Environment. In Medical Imaging V: Image Capture and Display, Volume 1444, Pages 26-37, 1991.
130. C. Barillot, F. Lachmann, B. Gibaud, J.M. Scarabin. 3D Display of MRI data in Neurosurgery: Segmentation and Rendering Aspects. In Medical Imaging V: Image Processing, Volume 1445, Pages 54-65, 1991.
131. J.L. Coatrieux, C. Barillot. A Survey of 3-D Display Techniques to Render 3-D Medical Data. In 3D Imaging in Medicine, K. H. Höhne, H. Fuchs, S.M. Pizer (eds.), NATO ASI Series F: Computer and Systems Sciences, Volume 60, Pages 175-195, Berlin Heidelberg, 1990.
132. C. Barillot. Visualisation 3D et Algorithmie en Médecine. In Conf. Société Française de Radiologie, Palais des Congrès, Paris, 1990.
133. C. Barillot, D. Lemoine, B. Gibaud, J.M. Scarabin. A Workstation Environment to Confront a Stereotactic Atlas and Multimodality In-Vivo Images. In Conf. Euro-Sigma'90, London, G-B, 1990.
134. C. Barillot, D. Lemoine, B. Gibaud, P.J. Toulemont, J.M. Scarabin. A PC Software Package to Confront Multimodality Images and a Stereotactic Atlas in Neurosurgery. In Medical Imaging IV, Volume 1232, Pages 188-199, Newport Beach CA, 1990.
135. R.A. Robb, C. Barillot. Interactive 3-D Image Display and Analysis. In Workshop on Volume Visualization, Chapel Hill, NC, 1989.
136. J.P. Manens, G. Le Gall, C. Barillot, B. Gibaud, F. Fresne, J.M. Scarabin. Irradiation en Condition Stéréotaxique: Une Approche Robotisée. In 28ème Congrès de la Société Française des Physiciens d'Hôpitaux, Lyon, France, 1989.
137. J.P. Manens, F. Fresne, C. Barillot, B. Gibaud, C. Chenal, H.M. Ben, M. Carsin, J.M. Scarabin, G. Le Gall. Multibeam Irradiation: A Robotic Approach. In 17th International Congress of Radiology, Paris, France, 1989.
138. F. Fresne, B. Gibaud, C. Barillot, C. Toumoulin, D. Lemoine, J.P. Manens, J.M. Scarabin. A Computer Assisted Stereotactic Approach for Multibeam Radiation Therapy Planning. In IEEE Engineering in Medicine and Biology, Volume 13(7), Pages 1936-1937, Seattle WA, 1989.
139. C. Barillot. Active Volumetric Compositing to Display Fuzzy Structures from Multiscale Volume Data. In IEEE Engineering in Medicine and Biology, Volume 13(6), Pages 1930-1932, Seattle WA, 1989.
140. R.A. Robb, C. Barillot. Interactive 3-D Image Display and Analysis. In 18th Conf. on Hybrid Image and Signal Processing, Pages 173-202, Orlando, 1988.
141. R. Renoulin, J.M. Scarabin, J.L. Coatrieux, J.C. Launay, G. Babonneau, B. Gibaud, D. Curet, G. Le Certen, B. Mahieddine, P.C. Islas, C. Barillot, M. Launay, F. Heuzé, F. Fresne, C. Toumoulin. The SIRENE Project. In Computer Assisted Radiology, H.U. Lemke (ed.), Pages 525-531, Berlin, RFA, 1987.
142. P. Jannin, C. Barillot, B. Gibaud, J.M. Scarabin, A. Bouliou. Octree Encoding with Volume and Surface Informations in Medical Imaging. In IEEE Engineering in Medicine and Biology, Pages 1666-1667, Boston, 1987.
143. R. Collorec, B. Gibaud, C. Barillot, A. Bouliou. Methods for Automatic 3-D Reconstruction of Cerebral Blood Vessels. In Acta Stereologica, Pages 745-750, Proc. ICS VII, 1987.
144. C. Barillot, B. Gibaud, L.M. Luo, O. Lis. Représentation 3-D de Structures Anatomiques à partir d'Examens Scanner. In 3ème Forum des Jeunes Chercheurs, Paris, France, 1986.
145. A. Legout, B. Gibaud, C. Barillot, J.J. Moreau. 3-D Representation of Cerebral Blood Vessels using Photogrammetry and Computer Graphics. In Biostereometrics'85, Volume 302, Pages 295-300, Cannes, 1985.
146. C. Barillot, B. Gibaud, L.M. Luo, J.L. Coatrieux. Exemples d'Applications de la Synthèse d'Images en Médecine. In Images Médicales et Visualisation 3D, Pages 9-18, Paris, 1985.
147. C. Barillot, B. Gibaud, L.M. Luo, C. Toumoulin, J.L. Coatrieux. Some Applications of Computer Graphics in Medicine. In IEEE Engineering in Medicine and Biology, Volume 1, Pages 623-627, Chicago, 1985.
148. C. Barillot, B. Gibaud, L.M. Luo, J.M. Scarabin. 3-D Representation of Anatomic Structures from CT Examinations. In Biostereometrics'85, Volume 302, Pages 307-314, Cannes, 1985.
149. S. Velut, C. Barillot, B. Gibaud, J.M. Scarabin. Synthèse d'Images et Vascularisation Cérébrale. In 67ème Congrès de l'Association des Anatomistes de Langue Française, Symposium sur la vascularisation Cérébrale, Rennes, 1984.
150. S. Velut, J. Santini, B. Gibaud, C. Barillot, J.M. Scarabin. Représentation Synthétique des Os du Crâne, Visualisation par Synthèse d'Images. In 67ème Congrès de l'Association des Anatomistes de Langue Française, Rennes, 1984.
151. B. Gibaud, C. Barillot, J.M. Scarabin. Photogrammétrie et Synthèse d'Images 3D pour la Représentation du Réseau Vasculaire Cérébral. In Forum des Jeunes Chercheurs, 1984.
152. C. Barillot, B. Gibaud, L.M. Luo, J.M. Scarabin, S. Velut, J.J. Moreau. Représentation Synthétique de Structures Anatomiques, Visualisation par Synthèse d'Images. In Proceedings GRETSI-CESTA, Pages 21-28, Biarritz, 1984.

National Conferences

1. L.S. Aït-Ali, S. Prima, S.P. Morrissey, G. Edan, C. Barillot. Fully automated lesion segmentation in patients with Multiple Sclerosis - a multisequence approach with longitudinal MRI data. March 2006.
2. L.S. Aït-Ali, S. Prima, B. Carsin-Nicol, S.P. Morrissey, M. Carsin, C. Barillot, G. Edan. Segmentation automatique des lésions de sclérose en plaques sur des études longitudinales d'IRM multi-séquences. March 2006.
3. L.S. Aït-ali, S. Prima, G. Edan, C. Barillot. Segmentation longitudinale des lésions de SEP en IRM cérébrale multimodale. In 15ème Congrès Francophone AFRIF/AFIA de Reconnaissance des Formes et Intelligence Artificielle, RFIA'2006, Tours, France, January 2006.
4. C. Ciofolo, C. Barillot. Analyse de forme pour la segmentation de structures cérébrales 3D par ensembles de niveau et commande floue. In 15ème Congrès Francophone AFRIF/AFIA de Reconnaissance des Formes et Intelligence Artificielle, RFIA'2006, Tours, France, January 2006.
5. J.-M. Favreau, C. Ciofolo, C. Barillot. Extraction et étude statistique du sillon calcarin. In Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC, MajecSTIC'2005, Rennes, France, 2005.
6. F. Rousseau, P. Hellier, C. Barillot. Méthode de calibration automatique pour système échographique 3D main-libre. In 14ème Congrès Francophone AFRIF/AFIA de Reconnaissance des Formes et Intelligence Artificielle, RFIA'2004, Toulouse, France, January 2004.
7. F. Rousseau, P. Hellier, C. Barillot. Méthode de calibration pour système échographique 3D main-libre. In 9èmes Journées francophones des jeunes chercheurs en analyse d'images et perception visuelle, ORASIS'2003, Pages 7-14, Gérardmer, France, May 2003.
8. P. Hellier, C. Barillot, E. Mémin, P. Pérez. Recalage d'images cérébrales par estimation robuste contextuelle du flot optique. In 17ème Colloque GRETSI sur le traitement du signal et des images, Volume 4, Pages 1077-1080, Vannes, France, September 1999.
9. P. Hellier, C. Barillot, E. Mémin, P. Pérez. Recalage d'images cérébrales par estimation robuste contextuelle du flot optique. In 7èmes Journées francophones des jeunes chercheurs en analyse d'images et perception visuelle, ORASIS'99, Pages 85-91, Aussois, France, April 1999.

Research Reports

1. J. Lecoeur, C. Barillot. Segmentation d'images cérébrales : État de l'art. Rapport de Recherche INRIA, No 6306, September 2007.
2. P. Coupé, P. Hellier, C. Barillot. État de l'art des méthodes de correction des déformations cérébrales per-opératoires. Publication Interne IRISA, No 1724, June 2005.
3. I. Corouge, P. Hellier, B. Gibaud, C. Barillot. A local approach for inter-individual functional registration. Rapport de Recherche INRIA, No 4415, March 2002.
4. F. Rousseau, C. Barillot. Quality Assessment of Electromagnetic Localizers in the Context of 3D Ultrasound. Research Report INRIA, No 4408, 2002.
5. I. Pratikakis, C. Barillot, P. Darnault. Towards Free-Hand 3-D Ultrasound. Research Report IRISA, No 0, 2002.
6. C. Baillard, C. Barillot, P. Bouthemy.. Robust Adaptive Segmentation of 3D Medical Images with Level Sets. INRIA Research Report Inria, No 0, December 2000.
7. P. Hellier, C. Barillot. Coupling dense and landmark-based approaches for non-rigid registration. Rapport de Recherche INRIA, No 4076, November 2000.
8. C. Baillard, P. Hellier, C. Barillot. Segmentation of 3D brain structures using level sets. Publication Interne IRISA, No 1291, January 2000.
9. I. Pratikakis, C. Barillot. Non-rigid registration of 3D Ultrasound. RR IRISA, 2000.
10. I. Pratikakis, C. Barillot, P. Darnault. Towards Free-Hand 3D Ultrasound. RR IRISA, 2000.
11. C. Barillot. Modèle Probabiliste de Sillons Corticaux : Comparaison avec des Méthodes de Fusion Globales en IRM et MEG. Rapport de Convention GIS Région Bretagne, 2000.
12. P. Hellier, C. Barillot, E. Mémin, P. Pérez. Estimation robuste 3D d'un champ de déformation pour le recalage non-linéaire inter-sujet d'images cérébrales. Rapport de Recherche INRIA, No 3812, November 1999.

Misc

1. P. Coupé, P. Hellier, C. Barillot. INRIABrainshift. Dépôt à l'agence pour la protection des programmes - IDDN.FR.001.110024.000.S.P.2008.000.21000, 2008.
2. P. Coupé, P. Yger, S. Prima, P. Hellier, C Kervrann, C. Barillot. MONADE: Multimodal and Optimized Non local meAns DEnoising. Dépôt à l'Agence pour la Protection des Programmes, numéro IDDN.FR.001.070033.000.S.P.2007.000.21000, February 2007.
3. P. Coupé, P. Hellier, C. Barillot. TULIPE : Three-dimensional ULtrasound reconstruction Incorporating ProbE trajectory. Dépôt à l'Agence pour la Protection des Programmes, numéro IDDN.FR.001.120034.000.A.2006.000.21000, January 2006.
4. C. Ciofolo, C. Barillot. Segmentation de structures cérébrales par modèles déformables en concurrence. pp. 0-0, 2005.
5. P. Hellier, C. Barillot. JULIEt: Joint Use of Landmarks and Intensities for Elastic registration. Dépôt à l'Agence pour la Protection des Programmes, 2003.
6. P. Hellier, C. Barillot, E. Mémin, P. Pérez. ROMEO: RObust Multigrid Elastic registration based on Optical flow. Dépôt à l'Agence pour la Protection des Programmes, numéro IDDN.FR.001.450015.00.S.P.2001.000.21000, July 2001.
7. C. Barillot, F. Boisse, P. Hellier. VIsTAL: Volumetric Images Treatments and Analysis Library. Dépôt à l'Agence pour la Protection des Programmes, 2000.
8. C. Barillot. SIMClassif et SIMTexture, Segmentation d'Images Médicales par analyse de Texture et par Classification bayésienne. 1999.
9. C. Barillot. SIMFuzzy, Segmentation d'Images Médicales Floue. 1999.
10. C. Barillot. Active contour modelling for the segmentation of medical images, SPIE Medical Imaging Conference: Workshop on Segmentation of Medical Images, San Diego, CA. 1999.
11. C. Barillot. Neuro-Anatomie Numérique : Potentiels et Limites. 1998.
12. C. Barillot, P. Jannin. SIM3D, Synthèse d'Images Médicales tri-dimmensionnelles. 1997.
13. C. Barillot, B. Gibaud. Data Fusion and Management of Anatomical Knowledge about Brain. 1993.
14. R. Collorec, B. Gibaud, C. Barillot, J.L. Coatrieux. Méthode pour la Reconstruction Tridimensionnelle de Réseaux Vasculaires à partir d'un Nombre très Limité d'Images Numériques Bidimensionnelles de Projection. 1987.
15. C. Barillot, B. Gibaud, L.M. Luo, J.M. Scarabin. Les Réseaux d'Images dans les Etablissements de Soins; Visualisation 3D et Synthèse d'Images en Médecine. 1984.
16. C. Barillot, B. Gibaud, L.M. Luo, J.M. Scarabin. Computer Representation of Anatomical Structures; Display of Computer Generated Images. 1984.

Thesis

1. C. Barillot. Fusion de données et imagerie 3D en medecine. Habilitation à diriger des recherches Université de Rennes I, 1999.
2. C. Barillot. Méthodes de reconstruction tri-dimensionnelle et de synthèse d'images appliquées à la représentation des structures morphologiques en médecine. PhD Thesis Université de Rennes I, 1984.

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