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GenOuest, Bioinformatics computing center of Ouest-genopole
The team transfers his results to the bioinformatics computing center of Ouest-Genopole. All our developments are progressively made available within a service platform. This platform has a strategic role in the genopole, offering access to various softwares and databases. It allows our team to filter from routine service requests new subjects of research with a good relevance in biology. We propose original tools for complex filtering of sequences. This includes GenoFrag for PCR Scanning, Wapam, STAN and ModelDesigner for pattern matching, and a set of pattern discovery algorithms. A first version of a graphical analyser for regulatory and metabolic networks is also available.
Softwares
Most of the softwares introduced here are available on the GenOuest platform.
- Biomaj is dedicated to the biological data bank management.
- Bioquali is a knowledge inference tool on the biological networks. Bioquali as a Plugin for Cytoscape allows us to visualize the inference and consistency analyses.
- Chavlh is a tool for hierarchical classification by similarity analysis of link on heterogeneous variables.
- Domain Organizer is a consensus domain visualization tool on a set of repeated sequences.
- Frost is a sequence/structure alignment tool of proteins (protein threading).
- Gassst
is a Global Alignment Short Sequence Search Tool.
- GenoFrag gives the ability to fragment a genomic sequence for PCR.
- PLAST is a Parallel Local Alignment Search Tool.
- Pygram is a graphical representation of repetition tool.
- Protomata Learner is a tool for modelling (even heterogeneous) family of protein at the sequence level by machine learning.
- ReMIX is a machine specialized in data indexation. ReMIX has got a huge memory capacity without any hard drive.
- Stan brings the facility to look for patterns in large sequences by using the suffix trees.
- Vast is a tool dedicated to compare protein structures.
- Wapam is a tool which looks for patterns defined by balanced bots and accelerated by the Rdisk machine.
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