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Rumen ANDONOV |
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Professor
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| Mail |
This e-mail address is being protected from spam bots, you need JavaScript enabled to view it
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| Address |
Symbiose |
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INRIA/Irisa - Campus de Beaulieu
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35042 RENNES Cedex - France
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| Tel |
+33 2 99 84 71 56
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| Fax |
+33 2 99 84 71 71
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Current position
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Professor at the University of Rennes 1 |
Research
Recent Publications
2007
R Andonov, G Collet, J Gibrat, A Marin, V Poirriez, and N Yanev
(2007).
Recent Advances in Solving the Protein Threading Problem
In: Grids for Bioinformatics and Computational Biology.
Wiley-Interscience, E-G. Talbi and A. Zomaya, (Edts.). (in print)
2006
N Yanev, P Veber, R Andonov, and S Balev
(2006).
Lagrangian Approaches for a class of Matching Problems in Computational Biology
INRIA, Rapport de recherche (RR-5973), (to appear in Computers and Mathematics with Applications)
G Collet, N Yanev, A Marin, R Andonov, and J Gibrat
(2006).
A flexible model for protein fold recognition
In:
Septièmes Journées Ouvertes de Biologie, Informatique et Mathématiques
(JOBIM), edited by A. Denise and P. Durrens and S. Robin and E. Rocha
and A. de Daruvar and A. Groppi, pages 215-216.
2005
V Poirriez, A Marin, R Andonov, and J Gibrat
(2005).
FROST: Revisited and Distributed
In: HiCOMB 2005, Fourth IEEE International Workshop on High Performance Computational Biology, Denver, USA.
P Veber, N Yanev, R Andonov, and V Poirriez
(2005).
Optimal protein threading by cost-splitting
In: 5th Workshop on Algorithms in Bioinformatics - WABI, 2005, LNCS 3692, pages 365–375.
R Andonov, S Balev, and N Yanev
(2005).
High Performance alignment methods for protein threading
In: Parallel Computing for Bioinformatics and Computational Biology,
ed. Albert Zomaya, Wiley & Sons, Ch. 18, pages 429-460.
R Andonov, D Lavenier, P Veber, and N Yanev
(2005).
Dynamic programming for LR-PCR segmentation of bacterium genomes
Concurrency and Computations: Practice and Experience 17(14):1657-1668.
2004
N Yanev, and R Andonov
(2004).
Parallel Divide&Conquer Approach for the Protein Threading Problem
Concurrency and Computation:Practice and Experience 16:1–14.
NB Zacour, M Gautier, R Andonov, D Lavenier, P Veber, A Sorokin, and YL Loir
(2004).
GenoFrag: software to design primers optimized for whole genome scanning by long-range PCR amplification
Nucleic Acids Res., January 2, 2004; 32(1):17-24.
R Andonov, D Lavenier, N Yanev, and P Veber
(2004).
Dynamic programming for LR-PCR segmention of bacterium genomes
In: HiComb 2004: Third IEEE International Workshop on High Performance
Computational Biology, Santa Fe, New Mexico, USA.
R Andonov, S Balev, and N Yanev
(2004).
Protein Threading Problem: From Mathematical Models to Parallel Implementations
INFORMS Journal on Computing 16(4):393-405.
Teaching
Master Research
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