Symbiose Project Team - INRIA/Irisa

Pierre PETERLONGO

	Title	Research Associate
	Mail	This e-mail address is being protected from spam bots, you need JavaScript enabled to view it
	Address	Symbiose
		INRIA/Irisa - Campus de Beaulieu
		35042 RENNES Cedex - France
	Tel	+33 2 99 84 74 59
	Fax	+33 2 99 84 71 71


Current Position	Research Associate at Symbiose project team

My citation

"Crains surtout pas le ridicule quand on ose pas des fois on recule"

La rue Kétanou

[08/02/2012] Paper kissplice accepted to Recomb-seq
[12/07/2011] New mapsembler version: http://alcovna.genouest.org/mapsembler/
[12/07/2011] Paper "Finding Long and Multiple Repeats with Edit Distance" accepted at PSC conference .
[30/03/2011]
- new kisSnp version: http://alcovna.genouest.org/kissnp-page/
- new mapsembler version: http://alcovna.genouest.org/mapsembler/ research report: click here
[16/03/2011] Mapsembler tool available for use: http://mapsembler.genouest.org . Full informations about mapsembler can be found on the alcovna web site: http://alcovna.genouest.org
[15/02/2011] Participation to the "Conference on Bioinformatics and High Throughput Sequencing - 2011". Institut Pasteur, Paris, 22 march 2011.
[07/10/2010] Workshop "Workshop Algorithmique, combinatoire du texte et applications en bio-informatique". Rennes - 10, 11 January 2011
[04/10/2010] Paper "An optimized filter for finding multiple repeats in DNA sequences" published in IEEE press proceedings
[01/08/2010] Paper "Identifying SNPs without a reference genome by comparing raw reads" accepted to SPIRE 2010
[10/06/2010] kisSnp tool available
[25/09/2010] Phd position available, contact me for more details
[06/05/2010] Alcovna web site public
[13/04/2010] Post Doc position available, contact me for more details

click here

click here

mapsembler , targetted assembly of short sequence reads
ksnSnp , compares set of NGS raw short reads for finding SNPs
Tuiuiu, a filter for finding multiple repeats in sequences is available here.
- A tutorial of Tuiuiu is available

July, August 2010: Exchange with the University of Sao Paulo and the LNCC, Petropolis.
December 2006: Exchange with the University of Sao Paulo and the University of Campo Grande, Brazil. Work with Alair Pereira do Lago.
September 2005: Exchange with the University of Sao Paulo, Brazil, work with Alair Pereira do Lago.
October 2004: Cooperation with Jan Holub, Czech Technical University, Prague.
April 2004: Cooperation with Costas S. Iliopoulos King's College London.

Title: "DNA sequence filtration for finding long multiple approximate repetitions"
Obtained the September 21, 2006. The jury was:
- Marie-France Sagot (supervisor)
- Maxime Crochemore (supervisor)
- Gregory Kucherov (reviewer)
- Christian Gautier (reviewer)
- Jean Berstel (jury chairman)
- Nadia Pisanti (invited)
- Thierry Lecroq (invited)
- Unfortunately, Mathieu Blanchette, reviewer, was not present
Manuscript (4 MB - french)
Slides (4.2 MB - french)