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Carito Guziolowski

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PhD INRIA

Carito.Guziolowski[at]irisa.fr

Project Symbiose, IRISA
Bureau A102
Campus de Beaulieu
35042 Rennes Cedex
+33 (0) 2 99 84 71 16

2nd year PhD student
Thesis : Qualitative modeling of biological networks
Advisors : Anne Siegel


Links to:

Journal articles and preprints

  •  P Veber, C Guziolowski, M Le Borgne, O Radulescu, and A Siegel. "Inferring the role of transcription factors in regulatory networks"
    BMC Bioinformatics 2008  9: 228  doi:10.1186/1471-2105-9-228 (Web access)
  • C Guziolowski, P Veber, M Le Borgne, O Radulescu, and A Siegel. "Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study"
    Journal of Biological Physics and Chemistry 7 2007 37-43 (preprint.pdf).  Technical Report RR-6190 INRIA (link)
  • A. Siegel, C. Guziolowski, P. Veber, O. Radulescu, M. Le Borgne. "Optimiser un plan d'expérience à partir de modèles qualitatifs?" BioFutur 2006, 275:27 (preprint.pdf)
  • G.Didier and C.Guziolowski. "Mapping Sequences by Parts"Algorithms for Molecular Biology 2007, 2:11doi:10.1186/1748-7188-2-11 (Web access)
  • M.Latorre, H.Silva, J.Saba, C.Guziolowski, P.Vizoso, V.Martinez, J.Maldonado, A.Morales, R.Caroca, V.Cambiazo, R.Campos-Vargas, M.Gonzalez, A.Orellana, J.Retamales, L.A.Meisel
    "JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow" BMC Bioinformatics 2006,7:513     doi:10.1186/1471-2105-7-513 (Web access)

Articles in conference proceedings - peer reviewed

  • C Guziolowski, P Veber, M Le Borgne, O Radulescu, A Siegel 'Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study' , RIAMS'06: Réseaux d'interaction, analyse, modélisation et simulation.  Lyon, France 2006. (Oral presentation) (file.pdf) (slides)

Posters

  • "Analysing Regulatory Networks using a Qualitative Approach", Genomes to Systems 2008.  Manchester, UK 2008.  (Poster) (file.pdf)

Meetings and presentations

  • "Adding missing post-transcriptional regulations to a regulatory network" JOBIM 2008 satellite meeting : Dynamical modelling and simulation of biological networks, Lille France 2008 (slides) 
  • "Qualitative modelling of post-transcriptional effects in the EWS/FLI1 signalling network", SITCON project meeting, Paris France 2008 (slides)
  • "Mapping sequences by parts", in Seminaire Bioinformatique, Symbiose, IRISA-INRIA, Rennes, France 2008.  (slides)
  • 'Inferring the role of transcription factors in regulatory networks', in The 2nd International Course in Yeast Systems Biology ICYSB, Göteborg, Sweden 2007 (slides)
  • 'Bioquali : tool for analyzing regulatory networks', Cinquièmes Rencontres autour de la plate-forme Bio-informatique Genouest, Rennes, France 2007. (slides) (video)

Thesis

  • "Algorithms for the comparison of DNA sequences".  Universidad de Chile, Departamento de Computacion.  Tesis de Ingenieria Civil en Computacion, January 2005 [.pdf in Spanish][slides.ppt in Spanish]

Bioinformatic Software

  • Pyquali/Bioquali. A tool dedicated to the analysis of compatibilities between an interaction graph and micro-array data.  Web access
  • A Data Management System that facilitates the Analysis of Large Volumes of Information in an EST Project Workflow. Web access


Experience in Research

  • 2006.  Internship in Bioinformatic: "Testing a new approach of Qualitative Modeling in Escherichia Coli transcriptional regulatory network" at Project Symbiose - IRISA. Rennes [report.pdf] [slides.ppt]
  • 2005.  Computer Engineer at the "Genomica Funcional en Nectarines" project in Santiago - Chile.  [http://www.genomavegetal.cl]
  • 2005.  Computer Engineer at the 'Laboratorio de Bioinformatica y Matematica del Genoma (LBGM)", CMM Department of the University of Chile. Santiago - Chile.

Cursus


Created by granchy
Last modified 07.08.2008 11:00 AM