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PhD
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| Mail |
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Symbiose
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INRIA/Irisa - Campus de Beaulieu
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35042 RENNES Cedex - France
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+33 2 99 84 71 15
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+33 2 99 84 71 71
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Interests :
- Protein 3D structure comparison.
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Integer programming.
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Clique and longest path problems.
Thesis:
- Title: "Protein Structure Comparison: From Contact Map Overlap Maximisation to Distance-based Alignment Search Tool".
- Defence date: 2010, the 29th of January.
- Jury:
- President: Pr. D. Lavenier, ENS Cachan Bretagne, France.
- Referee: DR2 F. Cazals, INRIA Sophia-Antipolis, France.
- Referee: Dr. G.W. Klau, CWI Life Sciences, Netherland.
- Member: DR2 J-F. Gibrat, INRA Jouy-en-Josas, France.
- Member: HDR M. Molnár, INSA Rennes, France.
- Thesis Advisor: Pr. R. Andonov, University of Rennes 1, France.
Publications and conferences:
-- 2010 --
- N. Malod-Dognin, R. Andonov and N. Yanev, "Maximum Clique in Protein Structure Comparison", SEA 2010, the ninth International Symposium on Experimental Algorithms, 2010.
- N. Malod-Dognin, R. Andonov and N. Yanev, "Solving Maximum Clique Problem for Protein Structure Similarity", Serdica Journal of Computing, 2010.
-- 2009 --
- N. Malod-Dognin, R. Andonov and N. Yanev, "Maximum clique approach to protein structure similarity", MASSEE (mathematical society of south-east europe) International congress on mathematics, Ohrid,
Macedonia, p.31, september 16-20,2009.
- N. Malod-Dognin, R. Andonov and N. Yanev, "Maximum clique and similarity measures", MMSC'09 International Workshop on Mathematical modelling and scientific
computations, Velingrad, Bulgaria,
p.22, september 23-26,2009.
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2008 --
- N. Malod-Dognin, R. Andonov, N. Yanev and J-F. Gibrat, "Modèle de PLNE pour la recherche de cliques de poids maximal", ROADEF 2008, p.307-308, 25/02/2008 (In french).
- R. Andonov, N. Yanev and N. Malod-Dognin, "An Efficient Lagrangian Relexation for the Contact Map Overlap Problem", K.A. Crandall and J. Lagergren (Eds.) : WABI 2008, LNBI 5251, p. 162-173, 2008.
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