Symbiose Project Team - INRIA/Irisa © 2007 - 2008

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Title PhD Student
Mail This e-mail address is being protected from spam bots, you need JavaScript enabled to view it
Address Symbiose
  INRIA/Irisa - Campus de Beaulieu
  35042 RENNES Cedex - France
Tel +33 2 99 84 71 16
Fax +33 2 99 84 71 71
 Current Position PhD Student

CV (link)

Journal Articles and Preprints

  • C Guziolowski, A Bourde, F Moreews, A Siegel. "BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks". BMC Genomics 2009, 10:244 doi:10.1186/1471-2164-10-244. (Web access) 
  • P Veber, C Guziolowski, M Le Borgne, O Radulescu, and A Siegel. "Inferring the role of transcription factors in regulatory networks". BMC Bioinformatics 2008 9: 228 doi:10.1186/1471-2105-9-228. (Web access)
  • C Guziolowski, P Veber, M Le Borgne, O Radulescu, and A Siegel. "Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study" Journal of Biological Physics and Chemistry 7 2007 37-43 (preprint.pdf). Technical Report RR-6190 INRIA (link)  
  • A. Siegel, C. Guziolowski, P. Veber, O. Radulescu, M. Le Borgne. "Optimiser un plan d'expérience à partir de modèles qualitatifs?" BioFutur 2006, 275:27 (preprint.pdf)
  • G.Didier and C.Guziolowski. "Mapping Sequences by Parts"Algorithms for Molecular Biology 2007, 2:11doi:10.1186/1748-7188-2-11. (Web access
  • M.Latorre, H.Silva, J.Saba, C.Guziolowski, P.Vizoso, V.Martinez, J.Maldonado, A.Morales, R.Caroca, V.Cambiazo, R.Campos-Vargas, M.Gonzalez, A.Orellana, J.Retamales, L.A.Meisel "JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow" BMC Bioinformatics 2006,7:513 doi:10.1186/1471-2105-7-513 (Web access)

 Articles in International Conferences

  • S Blachon, G Stoll, C Guziolowski, A Zinovyev, E Barillot, A Siegel, O Radulescu "Method for relating inter-patient gene copy
    numbers variations with gene expression via gene influence networks", BMIINT'09: Biomedical Informatics & Intelligent Methods in the support of Genomic Medicine, Thessaloniki, Grece 2009. (Web access )
  • C Guziolowski, J Gruel, O Radulescu, A Siegel 'Curating a large-scale regulatory network by evaluating its consistency with expression datasets', CIBB'08: 5th International Conference on Bioinformatics and Biostatistics, Salerno, Italy 2008, Lecture Notes in Computer Science, Springer vol. 5488, pp. 144-155 2009 (selected paper) (slides) (Web access )
  • A Siegel, M Le Borgne, O Radulescu, C Guziolowski, P Veber ''Qualitative response of interaction networks: application to the validation of biological models', Contribution to minisymposium New Research in Bioinformatics. ICIAM'07: 6th International Congress on Industrial and Applied Mathematics,  PAMM, vol. 7, no. 1, pp. 1121803-1121804, Zurich 2007.
  • C Guziolowski, P Veber, M Le Borgne, O Radulescu, A Siegel 'Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study' , RIAMS'06: Réseaux d'interaction, analyse, modélisation et simulation. Lyon, France 2006. (file.pdf) (slides)

Bioinformatic Applications

  • Bioquali Cytoscape Plugin. Web access (Cytoscape Plugins)
  • Pyquali/Bioquali. A tool dedicated to the analysis of compatibilities between an interaction graph and micro-array data. Web access
  • A Data Management System that facilitates the Analysis of Large Volumes of Information in an EST Project Workflow. Web access

Meetings and presentations

  • "“Plugin BioQuali pour Cytoscape: un nouvel outil mis en place sur la plate-forme”", Workshop in Gen2Bio: Les rencontres Biotech organises par OUEST-genopole, La Baule, March 2009 (slides)
  • "Qualitative functions to better modelling the EWS/FLI1 signalling network", SITCON project meeting, Paris, December 2008 (slides)
  • "Adding missing post-transcriptional regulations to a regulatory network" JOBIM 2008 satellite meeting : Dynamical modelling and simulation of biological networks, Lille France 2008 (slides)
  • "Qualitative modelling of post-transcriptional effects in the EWS/FLI1 signalling network", SITCON project meeting, Paris, May 2008 (slides)
  • "Mapping sequences by parts", in Seminaire Bioinformatique, Symbiose, IRISA-INRIA, Rennes, France 2008 (slides)
  • 'Inferring the role of transcription factors in regulatory networks', in The 2nd International Course in Yeast Systems Biology ICYSB, Göteborg, Sweden 2007 (slides)
  • 'Bioquali : tool for analyzing regulatory networks', Cinquièmes Rencontres autour de la plate-forme Bio-informatique Genouest, Rennes, France 2007 (slides)


  • 2005 - 2006: Master 2 Recherche en Bioinformatique, "Université de Rennes 1" Rennes []
  • 2005. Computer Engineer at the "Genomica Funcional en Nectarines" project in Santiago - Chile. []
  • 2005. Computer Engineer at the 'Laboratorio de Bioinformatica y Matematica del Genoma (LBGM)", CMM Department of the University of Chile. Santiago - Chile.
  • 1999 - 2005: Computer Science/Engineering (Ingeniero Civil en Computacion), "Universidad de Chile" Santiago - Chile. []

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