Symbiose Project Team - INRIA/Irisa © 2007 - 2008


Olivier SALLOU

osallou
Title Engineer
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Address Symbiose
  INRIA/Irisa - Campus de Beaulieu
  35042 RENNES Cedex - France
Tel +33 2 99 84 71 95
Fax +33 2 99 84 71 71
   
   
 Current Position  Research Engineer (Rennes 1 University)

 

 

Certifications:

  • PMP (Project Manager Professional)

 

Current projects:

  • Implementation of the Logol language. Logol is a highly expressive pattern language with a grammar describing biological structure (word complement, repetitions, substitution or distance ...). It is built to run on a single computer or a DRM system. It also provide graphical editing workflow tool to build the grammars and web-based analyser tools
  • Development of an indexation system for biological data with scalability, high availability and ready to use image for the biology community (SeqCrawler project).
  • Set up of a private cloud

Current Job: In charge of the developments for the GenOUEST bioinformatics platform http://www.genouest.org

  • Installation and maintenance of tools for the grid
  • Development of tools and services to access and use the platform
  • Development of specific tools in collaboration with Symbiose team (dna/protein sequence analysis, pattern search...)
  • Give the platform a larger visibility to the community
  • Develop collaboration with other community teams or private companies

  • Developments: 
    • prolog unit test framework (https://sourceforge.net/projects/plunittest/)
    • iziworkflow (web diagram editor, https://gforge.inria.fr/projects/iziworkflow/)
    • seqcrawler (Biologicial data indexation plafform,  https://sourceforge.net/projects/seqcrawler/)
    • Cassiopee (ruby library to search in strings with allowed errors)
    • Manband (multi master, multi node workflow orchestrator in Ruby)
    • Bandit (pure HTML/Javascript diagram editor library)
    • Debian developper

 

Biblio:

 

  • AnnotQTL: a new tool to gather functional and comparative information on a genomic region (Nucl. Acids Res. 2011 doi: 10.1093/nar/gkr361)
  • Poster seqcrawler: BOSC 2011, ISMB 2011
  • Seqcrawler: biological data indexing and browsing platform, BMC BioInformatics, doi:10.1186/1471-2105-13-175
  • GPSy: a cross-species gene prioritization system for conserved biological processes - applicaton in male gamete development (NAR). doi: 10.1093/nar/gks380

 

Previous position:

  • Project manager for Alcatel-Lucent :
    • development of softwares for the international market
    • collaboration with Genesys for call center software related developments
    • context: GSM, PSTN, VoIP, media server, call center, Intelligent Networks (Prepaid/postpaid)
 


http://www.irisa.fr/symbiose

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