current projets

• intensive computation environnement for bioinformatics : vapor.gforge.inria.fr

• NGS data processing : sigenae.org

• SOA and workflows

Publications and communications

SigReannot-mart: a query environment for expression microarray probe re-annotations
François Moreews, Gaelle Rauffet, Patrice Dehais, and Christophe Klopp
Database, The Journal of Biological databases and Curation. 2011

BioMart Central Portal: an open database network for the biological community
Jonathan M. Guberman, J. Ai, O. Arnaiz, Joachim Baran, Andrew Blake, Richard Baldock, Claude Chelala, David Croft, Anthony Cros, Rosalind J. Cutts, A. Di Génova, Simon Forbes, T. Fujisawa, E. Gadaleta, D. M. Goodstein, Gunes Gundem, Bernard Haggarty, Syed Haider, Matthew Hall, Todd Harris, Robin Haw, S. Hu, Simon Hubbard, Jack Hsu, Vivek Iyer, Philip Jones, Toshiaki Katayama, R. Kinsella, Lei Kong, Daniel Lawson, Yong Liang, Nuria Lopez-Bigas, J. Luo, Michael Lush, Jeremy Mason, Francois Moreews, Nelson Ndegwa, Darren Oakley, Christian Perez-Llamas, Michael Primig, Elena Rivkin, S. Rosanoff, Rebecca Shepherd, Reinhard Simon, B. Skarnes, Damian Smedley, Linda Sperling, William Spooner, Peter Stevenson, Kevin Stone, J. Teague, Jun Wang, Jianxin Wang, Brett Whitty, D. T. Wong, Marie Wong-Erasmus, L. Yao, Ken Youens-Clark, Christina Yung, Junjun Zhang, and Arek Kasprzyk
Database, The Journal of Biological databases and Curation. 2011

SLICEE: A Service oriented middleware for intensive scientific computation
J. Piat, F. Moreews, O. Collin, D. Lavenier, A. Cornu
to appear in Proceedings of Services 2011 International Conference, Washington DC, USA.

On Demand Bioinformatics Intensive Workflow Execution Environment
J. Piat, F. Moreews, O. Salou,
Bioinformatics Open Source Conference - 07 16 2011 - Vienna

BioDesc : gestion d’un entrepôt multiformat de descriptions de ressources bioinformatiques
P. Picouet, Z. Doughi, L. Brillet, E. Corre, C. Caron, O. Collin, F. Moreews et X. Bailly
Jobim 2010 Montpellier - poster

Oocyte-Somatic Cells Interactions, Lessons from Evolution
Charlier C., Montfort J., Chabrol O., Moreews F., Salhab M., Richard-Parpaillon L., Dalbies-Tran R., Hennequet-Antier C.,
Chesnel F., Uzbekova S., Pontarotti P. & Bobe J.
VIIIe Colloque Agenae / Genanimal 2010 Bordeaux - poster

Generationand analysis of a 29,745 unique Expressed Sequence Tags from thePacific oyster (Crassostrea gigas) assembled into a publicly accessibledatabase: the GigasDatabase.
Fleury E, HuvetA, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachère E, Tanguy A,Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, DaveyG, Lapègue S, Sauvage C, Corporeau C, Moal J, Gavory F, Wincker P,Moreews F, Klopp C, Mathieu M, Boudry P, Favrel P.
BMC Genomics . 2009 Jul 29;10:341.

sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters.
Casel P, Moreews F, Lagarrigue S, Klopp C.
BMC Proc. 2009 Jul 16;3 Suppl 4:S3.

BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks.
Guziolowski C, Bourdé A, Moreews F, Siegel A.
BMC Genomics. 2009 May 26;10:244.

A Framework for Building Reliable Distributed Bioinformatics Service Repositories
Moreews, Francois;
ICWS 2009. IEEE International Conference on Web Services, 2009
6-10 July 2009Page(s):1018- 1019

QBIOS: driving toward a trusted distributed bioinformatics service infrastructure
François Moreews
ISMB 2009 - poster

GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus
François Moreews
ISMB 2008  - poster

BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network
Marc Wessner, Martin Senger, Franck Samson, Philippe Picouet, François Moreews, Hervé Ménager, Véronique Martin, Sébastien Letort, Catherine Letondal, Mark Hoebeke, Jérome Gouzy, Jean-françois Gibrat, Erwan Corre, Olivier Collin, Sébastien Carrere, Christophe Caron, Pierre Tufféry and Bertrand Néron.
JOBIM 2008

Transcriptome profiling of the feeding-to-fasting transition in chicken liver.
DésertC, Duclos MJ, Blavy P, Lecerf F, Moreews F, Klopp C, Aubry M, HeraultF, Le Roy P, Berri C, Douaire M, Diot C, Lagarrigue S.
BMC Genomics . 2008 Dec 17;9:611.

Contribution To The Annotations Of The Chicken 20K Oligo Microarray Of ARK-Genomics
Christophe Klopp , François Moreews , Marc Aubry , Sandrine Lagarrigue
Plant & Animal Genomes XVI Conference, January 12-16, 2008, San Diego, CA

Transcriptome Profiling Of Feeding-To-Fasting Transition In Chicken Liver Using A Chicken 20K Oligo Microarray
Colette Désert , Pierre Blavy , Francois Moreews , Michel Duclos , Pascale Leroy , Madeleine Douaire , Christian Diot , Sandrine Lagarrigue
Plant & Animal Genomes XVI Conference, January 12-16, 2008, San Diego, CA

Z Kote-Jarai, L Matthews, A Osorio, S Shanley, I Giddings, F Moreews, I Locke, DG Evans, D Eccles, RD Williams, M Girolami, C Campbell, and R Eeles(2006).
Accurate prediction of BRCA1 and BRCA2 heterozygous genotype using expression profiling after induced DNA damage.
Clin Cancer Res 12(13):3896-901.

C Alland,  F Moreews, D Boens, M Carpentier, S Chiusa, M Lonquety, NRenault, Y Wong, H Cantalloube, J Chomilier, J Hochez, J Pothier, B OVilloutreix, J-F Zagury, and P Tuffery (2005).
RPBS: a web resource for structural bioinformatics.
Nucleic Acids Res 33(Web Server issue):W44-9.

see http://www.ncbi.nlm.nih.gov/pubmed?term=moreews