Publications for Olivier Dameron

[103] Yann Rivault, Nolwenn Le Meur, and Olivier Dameron. A similarity measure based on care trajectories as sequences of sets. In Artificial Intelligence in Medicine Europe (AIME2017), 2017. Short paper, poster and presentation. [ bib ]
[102] Philippe Finet, Bernard Gibaud, Olivier Dameron, and Régine Le Bouquin-Jeannès. Interoperable infrastructure and implementation of a health data model for remote monitoring of chronic diseases with comorbidities. In Proceedings of the Journées d'étude sur la Télésanté, IUT de Bourges, 2017. [ bib ]
[101] Xavier Garnier, Anthony Bretaudeau, Olivier Dameron, Olivier Filangi, Fabrice Legeai, and Anne Siegel. AskOmics, a web tool to integrate and query biological data. In Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2016), demo session, 2017. Short paper and demonstration. [ bib ]
[100] Xavier Garnier, Olivier Dameron, Olivier Filangi, Fabrice Legeai, and Anthony Bretaudeau. Integration of linked data into galaxy using AskOmics. In Galaxy Community Conference 2017, Montpellier, 2017. [ bib | http ]
[99] Jean Coquet, Nathalie Théret, Vincent Legagneux, and Olivier Dameron. Identifying functional families of trajectories in biological pathways by soft clustering: Application to tgf-beta signaling. In 15th international conference on Computational Methods in Systems Biology (CMSB2017), Lecture Notes in Computer Science / Lecture Notes in Bioinformatics. Springer, 2017. In press. [ bib | http ]
[98] Yann Rivault, Olivier Dameron, and Nolwenn Le Meur. La gestion de données médico-administratives grâce aux outils du web sémantique. In Proceedings of the conference Évaluation Management Organisation Information Santé (EMOIS2016, Dijon, France), 2016. [In French, short abstract]. [ bib | http ]
[97] Yann Rivault, Nolwenn Le Meur, and Olivier Dameron. Complications post-opératoires et mode de prise en charge en angioplastie : apport du programme de médicalisation des systèmes d'information (PMSI). In Congrès Adelf-Epiter 2016 Rennes, France), 2016. [In French, short abstract]. [ bib ]
[96] Arnaud Rosier, Philippe Mabo, Lynda Temal, Pascal Van Hille, Olivier Dameron, Louise Deleger, Cyril Grouin, Pierre Zweigenbaum, Julie Jacques, Emmanuel Chazard, Laure Laporte, Christine Henry, and Anita Burgun. Remote monitoring of cardiac implantable devices: Ontology driven classification of the alerts. Studies in health technology and informatics, 221:59--63, 2016. [ bib | http ]
[95] Philippe Finet, Bernard Gibaud, Olivier Dameron, and Régine Le Bouquin-Jeannès. Relevance of health level 7 clinical document architecture and integrating the healthcare enterprise cross-enterprise document sharing profile for managing chronic wounds in a telemedicine context. Healthcare technology letters, 3(1):22--26, 2016. [ bib | http ]
[94] Frédéric Balusson, MA Botrel, Olivier Dameron, Yann Dauxais, Erwan Drezen, Alain Dupuy, Thomas Guyet, David Gross-Amblard, André Happe, Nolwenn Le Meur, B. Le Nautout, Emmanuelle Leray, E Nowack, C Rault, Emmanuel Oger, and E Polard. PEPS: a platform for supporting studies in pharmaco-epidemiology using medico-administrative databases. In e-Health Research International congress (EHR20016), 2016. e-Poster. [ bib ]
[93] Aurélie Évrard, Charles Bettembourg, Mélanie Jubault, Olivier Dameron, Olivier Filangi, Anthony Bretaudeau, and Fabrice Legeai. Integration and query of biological datasets with semantic web technologies: AskOmics. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), poster session, 2016. [ bib ]
[92] Aurélie Évrard, Charles Bettembourg, Olivier Dameron, Olivier Filangi, Anthony Bretaudeau, Fabrice Legeai, Régine Delourme, Maria Manzanares-Dauleux, and Mélanie Jubault. Comparative genomic analysis of clubroot resistance in the brassicaceae family. In Brassica 2016 conference, Melbourne Australia, poster session, 2016. [ bib ]
[91] Fabrice Legeai, Anthony Bettembourg, Charles Bretaudeau, Yvanne Chaussin, Olivier Dameron, and Denis Tagu. Bipaa/askomics, a new and easy approach for querying genomics and epigenomics elements in interaction. In XXVth International Congress of Entomology 2016, Orlando Florida USA, page 349, 2016. Presentation 2809. [ bib ]
[90] Olivier Dameron. Ontology-based methods for analyzing life science data. Habilitation à diriger des recherches, Université Rennes 1, January 2016. 173 pages. [ bib | http ]
[89] Andrej Machno, Pierre Jannin, Olivier Dameron, Werner Korb, Gerik Scheuermann, and Jürgen Meixensberger. Ontology for assessment studies of human-computer-interaction in surgery. Artificial intelligence in medicine, 63(2):73--84, 2015. [ bib ]
[88] Philippe Finet, Régine Le Bouquin-Jeannès, Olivier Dameron, and Bernard Gibaud. Review of current telemedicine applications for chronic diseases: Toward a more integrated system? IRBM, 2015. In press. [ bib ]
[87] Philippe Finet, Bernard Gibaud, Olivier Dameron, and Régine Le Bouquin-Jeannès. Interopérabilité d'un système de capteurs en télémédecine. In Proceedings of the Journées d'étude sur la Télésanté, UTC Compiègne, 2015. [ bib ]
[86] Yann Rivault, Olivier Dameron, and Nolwenn Le Meur. Une infrastructure générique basée sur les apports du web sémantique pour l'analyse des bases médico-administratives. In Proceedings of the IN-OVIVE workshop (INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l'Environnement), conférence IC (Ingénierie des Connaissances) PFIA, 2015. [ bib ]
[85] Charles Bettembourg, Olivier Dameron, Anthony Bretaudeau, and Fabrice Legeai. Intégration et interrogation de réseaux de régulation génomique et post-génomique. In Proceedings of the IN-OVIVE workshop (INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l'Environnement), conférence IC (Ingénierie des Connaissances) PFIA, 2015. [ bib ]
[84] Jean Coquet, Geoffroy Andrieux, Jacques Nicolas, Olivier Dameron, and Nathalie Theret. Analysis of tgf-beta signalization pathway thanks to topological and semantic web methods. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2015), poster session, 2015. [ bib ]
[83] Charles Bettembourg, Christian Diot, and Olivier Dameron. Optimal threshold determination for interpreting semantic similarity and particularity: Application to the comparison of gene sets and metabolic pathways using GO and ChEBI. PloS one, 10(7):e0133579, 2015. [ bib ]
[82] Arnaud Rosier, Philippe Mabo, Lynda Temal, Pascal Van Hille, Olivier Dameron, Louise Deléger, Cyril Grouin, Pierre Zweigenbaum, Julie Jacques, Emmanuel Chazard, Laure Laporte, Christine Henry, and Anita Burgun. Personalized and automated remote monitoring of atrial fibrillation. Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology, 18(3):347--352, 2015. [ bib ]
[81] Charles Bettembourg, Christian Diot, and Olivier Dameron. Semantic particularity measure for functional characterization of gene sets using Gene Ontology. PLoS ONE, 9(1):e86525, 2014. [ bib ]
[80] Gautier Defossez, Alexandre Rollet, Olivier Dameron, and Pierre Ingrand. Temporal representation of care trajectories of cancer patients using data from a regional information system: an application in breast cancer. BMC Medical Informatics and Decision Making, 14(1):24, 2014. [ bib ]
[79] Frederic Herault, Annie Vincent, Olivier Dameron, Pascale Le Roy, Pierre Cherel, and Marie Damon. The longissimus and semimembranosus muscles display marked differences in their gene expression profiles in pig. PloS one, 9(5):e96491, 2014. [ bib ]
[78] Pierre-Yves Le Bail, Jérôme Bugeon, Olivier Dameron, Alice Fatet, Wiktoria Golik, Jean-François Hocquette, Catherine Hurtaud, Isabelle Hue, Catherine Jondreville, Léa Joret, Marie-Christine Meunier-Salaün, Jean Vernet, Claire Nedellec, Matthieu Reichstadt, and Philippe Chemineau. Un langage de référence pour le phénotypage des animaux d'élevage : l'ontologie ATOL. Production Animale, 27(3):195--208, 2014. [ bib ]
[77] Olivier Dameron and Gregory Farrant. La bioinformatique avec Biopython. GNU/Linux Magazine (French edition), HS(73):84--97, 2014. [ bib | .html ]
[76] François Moreews, Yvan Le Bras, Olivier Dameron, Cyril Monjeaud, and Olivier Collin. Integrating galaxy workflows in a metadata management environment. In Galaxy Community Conference GCC2014, Proceedings, 2014. [ bib | http ]
[75] Sylvain Prigent, Guillaume Collet, Simon M Dittami, Ludovic Delage, Floriane Ethis de Corny, Olivier Dameron, Damien Eveillard, Sven Thiele, Jeanne Cambefort, Catherine Boyen, Anne Siegel, and Thierry Tonon. The genome-scale metabolic network of ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond. The Plant journal : for cell and molecular biology, 80(2):367--381, 2014. [ bib ]
[74] Isabelle Hue, Jérôme Bugeon, Olivier Dameron, Alice Fatet, Catherine Hurtaud, Léa Joret, Marie-Christine Meunier-Salaün, Claire Nédellec, Matthieu Reichstadt, Jean Vernet, and Pierre-Yves Le Bail. ATOL and EOL ontologies, steps towards embryonic phenotypes shared worldwide? In Proceedings of the 4th Mammalian Embryo Genomics Meeting, October 2013, Quebec City, volume 149 of Animal Reproduction Science, page 99, 2014. [ bib ]
[73] Alexandre Rollet, Gautier Defossez, Olivier Dameron, Poitou-Charentes CoRIM, Poitou-Charentes CRISAP, and Pierre Ingrand. Développement et évaluation d'un algorithme de représentation des parcours de soins de patientes atteintes d'un cancer du sein à partir des données d'un système d'information régional. In Proceedings of the conference Évaluation Management Organisation Information Santé (EMOIS2013, Nancy, France), 2013. [In French, short abstract]. [ bib | .pdf ]
[72] Jean-Francois Ethier, Olivier Dameron, Vasa Curcin, Mark M. McGilchrist, Robert A. Verheij, Theodoros N. Arvanitis, Adel Taweel, Brendan C. Delaney, and Anita Burgun. A unified structural/terminological framework based on LexEVS: application to TRANSFoRm. Journal of the American Medical Informatics Association, 20(5):986--994, 2013. [ bib | .pdf ]
[71] Philippe Finet, Régine Le Bouquin-Jeannès, and Olivier Dameron. La télémédecine dans la prise en charge des maladies chroniques [in french]. Techniques Hospitalières, (740), 2013. [ bib ]
[70] Olivier Dameron, Charles Bettembourg, and Nolwenn Le Meur. Measuring the evolution of ontology complexity: the Gene Ontology case study. PLoS ONE, 8(10):e75993, 2013. [ bib | .pdf ]
[69] Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourdé, Anita Burgun, and Marc Cuggia. OWL model of clinical trial eligibility criteria compatible with partially-known information. Journal of Biomedical Semantics, 4(1), 2013. [ bib ]
[68] Anthony Bretaudeau, Olivier Dameron, Fabrice Legeai, and Yvan Rahbé. AphidAtlas : avancées récentes. In M. Uzest, editor, Proceedings of BAPOA 2013 MOP. INRA, CIRAD Lavalette Campus Montpellier, France, 2013. [In French]. [ bib ]
[67] Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourdé, Anita Burgun, and Marc Cuggia. OWL model of clinical trial eligibility criteria compatible with partially-known information. In Proceedings of the Semantic Web for Life Sciences workshop SWAT4LS2012, 2012. [ bib | .pdf ]
[66] Charles Bettembourg, Christian Diot, Anita Burgun, and Olivier Dameron. GO2PUB: Querying PubMed with semantic expansion of gene ontology terms. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2012), 2012. [ bib ]
[65] Charles Bettembourg, Christian Diot, Anita Burgun, and Olivier Dameron. GO2PUB: Querying PubMed with semantic expansion of gene ontology terms. Journal of biomedical semantics, 3(1):7, 2012. [ bib | .pdf ]
[64] Marc Cuggia, Jean-Charles Dufour, Oussama Zekri, Isabelle Gibaud, Cyril Garde, Catherine Bohec, Régis Duvauferrier, Dominique Fieschi, Paolo Besana, Laurent Charlois, Annabel Bourdé, Nicolas Garcelon, Jean-Francois Laurent, Marius Fieschi, and Olivier Dameron. ASTEC automatic selection of clinical trials based on eligibility criteria. IRBM, 2012. [ bib ]
[63] Wiktoria Golik, Olivier Dameron, Jérôme Bugeon, Alice Fatet, Isabelle Hue, Catherine Hurtaud, Matthieu Reichstadt, Marie-Christine Salaün, Jean Vernet, Léa Joret, Frédéric Papazian, Claire Nédellec, and Pierre-Yves Le Bail. ATOL: the multi-species livestock trait ontology. In Proceedings of the 6th Metadata and Semantics Research Conference MTSR, 2012. [ bib ]
[62] A Machno, P Jannin, O Dameron, W Korb, G Scheuermann, and J Meixensberger. Analysis of MCI evaluation studies in surgery. In Proceedings of the Computer Assisted Radiology and Surgery conference CARS2012, 2012. In press. [ bib ]
[61] Pascal van Hille, Julie Jacques, Julien Taillard, Arnaud Rosier, David Delerue, Anita Burgun, and Olivier Dameron. Comparing Drools and ontology-based reasoning approaches for telecardiology decision support. Studies in health technology and informatics, 180:300--304, 2012. [ bib | .pdf ]
[60] Olivier Dameron, Pascal van Hille, Lynda Temal, Arnaud Rosier, Louise Deléger, Cyril Grouin, Pierre Zweigenbaum, and Anita Burgun. Comparison of OWL and SWRL-based ontology modeling strategies for the determination of pacemaker alerts severity. In Proceedings of the American Medical Informatics Association Conference AMIA, page 284, 2011. [ bib ]
[59] Charles Bettembourg, Christian Diot, and Olivier Dameron. Cross-species metabolic pathways comparison: Focus on mouse, human and chicken lipid metabolism. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2011), 2011. In press. [ bib ]
[58] A Burgun, A Rosier, L Temal, J Jacques, R Messai, L Duchemin, L Deleger, C Grouin, P Van Hille, P Zweigenbaum, R Beuscart, D Delerue, O Dameron, P Mabo, and C Henry. Decision support in telecardiology: An ontology-based patient-centered approach. IRBM, 32(3):191--194, 2011. [ bib ]
[57] Marc Cuggia, Jean-Charles Dufour, Paolo Besana, Olivier Dameron, Regis Duvauferrier, Dominique Fieschi, Catherine Bohec, Annabel Bourdé, Laurent Charlois, Cyril Garde, Isabelle Gibaud, Jean-Francois Laurent, Oussama Zekri, and Marius Fieschi. ASTEC: A system for automatic selection of clinical trials. In Proceedings of the American Medical Informatics Association Conference AMIA, page 1729, 2011. [ bib ]
[56] Cyril Grouin, Louise Deléger, Arnaud Rosier, Lynda Temal, Olivier Dameron, Pascal van Hille, Anita Burgun, and Pierre Zweigenbaum. Automatic computation of CHA2DS2-VASc score: Information extraction from clinical texts for thromboembolism risk assessment. In Proceedings of the American Medical Informatics Association Conference AMIA, pages 501--510, 2011. [ bib | .pdf ]
[55] Anita Burgun, Lynda Temal, Arnaud Rosier, Olivier Dameron, Philippe Mabo, Pierre Zweigenbaum, Regis Beuscart, David Delerue, and Henry Christine. Integrating clinical data with information transmitted by implantable cardiac defibrillators to support medical decision in telecardiology: the application ontology of the AKENATON project. In Proceedings of the American Medical Informatics Association Conference AMIA, page 992, 2010. [ bib ]
[54] Anita Burgun, Arnaud Rosier, Lynda Temal, Olivier Dameron, Philippe Mabo, Pierre Zweigenbaum, Régis Beuscart, David Delerue, and Christine Henry. Supporting medical decision in telecardiology: a patient-centered ontology-based approach. In Medinfo 2010, 2010. In press. [ bib ]
[53] Lynda Temal, Arnaud Rosier, Olivier Dameron, and Anita Burgun. Mapping BFO and DOLCE. Studies in health technology and informatics, 160:1065--1069, 2010. [ bib | .pdf ]
[52] Nicolas Lebreton, Christophe Blanchet, Daniela Barreiro Claro, Julie Chabalier, Anita Burgun, and Olivier Dameron. Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study. In 12th International Conference on Information Integration and Web-based Applications and Services (iiWAS2010), pages 845--848, 2010. [ bib | .pdf ]
[51] Amrapali Zaveri, Luciana Cofiel, Jatin Shah, Shreyasee Pradhan, Edwin Chan, Olivier Dameron, Ricardo Pietrobon, and Beng Ti Ang. Achieving high research reporting quality through the use of computational ontologies. Neuroinformatics, 8(4):261--271, 2010. [ bib | .pdf ]
[50] Olivier Dameron, Charles Bettembourg, and Léa Joret. Quantitative cross-species comparison of GO annotations: advantages and limitations of semantic similarity measure. In 11th International Protégé Conference, 2009. [ bib | .pdf ]
[49] Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Une procédure d'anonymisation à deux niveaux pour créer un corpus de comptes rendus hospitaliers. In Journées Francophones d'Informatique Médicale, 2009. [ bib | .pdf ]
[48] Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Testing tactics to localize de-identification. In Proceedings of the Medical Informatics in Europe conference (MIE'2009), 2009. [ bib ]
[47] Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Testing tactics to localize de-identification. Studies in health technology and informatics, 150:735--739, 2009. [ bib | .pdf ]
[46] Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Risques, technologies de l'information pour les pratiques médicales, volume XVII, chapter Une procédure d'anonymisation à deux niveaux pour créer un corpus de comptes-rendus hospitaliers. Springer-Verlag France, 2009. [ bib | .pdf ]
[45] Nicolas Lebreton, Christophe Blanchet, Julie Chabalier, and Olivier Dameron. Utilisation d'ontologies de tâches et de domaine pour la composition semi-automatique de services web bioinformatiques. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2009), 2009. [ bib ]
[44] Lynda Temal, Arnaud Rosier, Olivier Dameron, and Anita Burgun. Modeling cardiac rhythm and heart rate using BFO and DOLCE. In International Conference for Biomedical Ontologies, 2009. [ bib | .pdf ]
[43] Olivier Dameron and Julie Chabalier. Bio-ontologies tutorial. In A. Bairoch, S. Cohen-Boulakia, and Froidevaux C., editors, Proceedings of the Data Integration In Life Science conference DILS, volume 5109 of LNBI, page 208, 2008. [ bib ]
[42] Elena Beisswanger, Vivian Lee, Jung-Jae Kim, Dietrich Rebholz-Schuhmann, Andrea Splendiani, Olivier Dameron, Stefan Schulz, and Udo Hahn. Gene Regulation Ontology (GRO): design principles and use cases. In Studies in Health technology and informatics - Proceedings of the Medical Informatics in Europe conference (MIE'08), volume 136, pages 9--14, 2008. [ bib | .pdf ]
[41] Nicolas Lebreton, Olivier Dameron, Christophe Blanchet, and Julie Chabalier. Utilisation d'ontologies de tâches et de domaine pour la composition semi-automatique de services web bioinformatiques. In Proceedings of the Journées Ouvertes de Biologie, Informatique et Mathématiques (Jobim 2008), 2008. [ bib ]
[40] Élodie Roques, Julie Chabalier, and Olivier Dameron. Enrichissement sémantique de patrons syntaxiques pour l'amélioration du mapping entre voies métaboliques et processus biologiques. In Proceedings of the Journées Ouvertes de Biologie, Informatique et mathématiques (Jobim 2008), 2008. [ bib ]
[39] Olivier Dameron, Mark A. Musen, and Bernard Gibaud. Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. Artificial Intelligence in Medicine, 39(3):217--225, 2007. [ bib | .pdf ]
[38] Olivier Dameron and Julie Chabalier. Automatic generation of consistency constraints for an OWL representation of the FMA. In 10th International Protégé Conference, 2007. [ bib | .pdf ]
[37] V Bertaud, I Belhadj, O Dameron, N Garcelon, L Hendaoui, F Marin, and R Duvauferrier. L'informatisation du signe radiologique. Journal de Radiologie, 88(1):27--37, 2007. [ bib ]
[36] Julie Chabalier, Olivier Dameron, and Anita Burgun. Integrating disease and pathway ontologies. In Proceedings of the ISMB conference, Poster Session, 2007. [ bib ]
[35] Julie Chabalier, Olivier Dameron, and Anita Burgun. Integrating and querying disease and pathway ontologies: building an OWL model and using RDFS queries. In Bio-Ontologies Special Interest Group, Intelligent Systems for Molecular Biology conference (ISMB'07), 2007. [ bib | .pdf ]
[34] Julie Chabalier, Olivier Dameron, and Anita Burgun. Using knowledge about pathways as an organizing principle for disease ontologies. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM'07), 2007. [ bib ]
[33] Gwenaëlle Marquet, Olivier Dameron, Stephan Saikali, Jean Mosser, and Anita Burgun. Grading glioma tumors using OWL-DL and NCI thesaurus. In Proceedings of the American Medical Informatics Association Conference AMIA'07, pages 508--512, 2007. [ bib ]
[32] Andrea Splendiani, Elena Beisswanger, Jung-Jae Kim, Vivian Lee, Olivier Dameron, and Dietrich Rebholz-Schuhmann. Bio-ontologies in the context of the BOOTStrep project. In Proceedings of the Bio-Ontologies SIG Workshop ISMB, (poster), 2007. [ bib ]
[31] Olivier Dameron, Élodie Roques, Daniel L. Rubin, Gwenaëlle Marquet, and Anita Burgun. Grading lung tumors using OWL-DL based reasoning. In 9th International Protégé Conference, 2006. [ bib | .pdf ]
[30] Daniel L. Rubin, Olivier Dameron, Yasser Bashir, David Grossman, Parvati Dev, and Mark A. Musen. Using ontologies linked with geometric models to reason about penetrating injuries. Artificial Intelligence in Medicine, 37(3):167--176, 2006. [ bib | .pdf ]
[29] Julie Chabalier, Gwenaëlle Marquet, Olivier Dameron, and Anita Burgun. Enrichissement de la hiérarchie KEGG par l'exploitation de Gene Ontology. In Workshop OGSB, JOBIM'06, 2006. [ bib ]
[28] Olivier Dameron, Daniel L. Rubin, and Mark A. Musen. Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study. In American Medical Informatics Association Conference AMIA05, pages 181--185, 2005. [ bib | .pdf ]
[27] Olivier Dameron. Keeping modular and platform-independent software up-to-date: benefits from the Semantic Web. In 8th International Protégé Conference, 2005. [ bib | .pdf ]
[26] Bernard Gibaud, Olivier Dameron, Éric Poiseau, and Pierre Jannin. Implementation of atlas-matching capabilities using Web Services technology: lessons learned from the development of a demonstrator. In Computer Assisted Radiology and Surgery 2005, 2005. [ bib ]
[25] Christine Golbreich, Olivier Bierlaire, Olivier Dameron, and Bernard Gibaud. Use case: Ontology with rules for identifying brain anatomical structures. In W3C Workshop on Rule Languages for Interoperability, 2005. [ bib ]
[24] Christine Golbreich, Olivier Bierlaire, Olivier Dameron, and Bernard Gibaud. What reasoning support for ontology and rules? the brain anatomy case study. In 8th International Protégé Conference, 2005. [ bib ]
[23] Daniel L. Rubin, Olivier Dameron, and Mark A. Musen. Using OWL and Description Logics based classification for reasoning in biomedical applications. In 8th International Protégé Conference, 2005. [ bib ]
[22] Daniel L. Rubin, Olivier Dameron, and Mark A. Musen. Use of description logic classification to reason about consequences of penetrating injuries. In American Medical Informatics Association Conference AMIA05, pages 649--653, 2005. [ bib | .pdf ]
[21] Olivier Dameron, Bernard Gibaud, and Xavier Morandi. Numeric and symbolic representation of the cerebral cortex anatomy: Methods and preliminary results. Surgical and Radiologic Anatomy, 26(3):191--197, 2004. [ bib | .pdf ]
[20] Olivier Dameron, Bernard Gibaud, and Mark Musen. Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. In First International Workshop on Formal Biomedical Knowledge Representation KRMED04, pages 30--38, 2004. [ bib | .pdf ]
[19] Olivier Dameron and Mark A. Musen. Accessing and manipulating life-sciences ontologies using web services. In W3C Workshop on Semantic Web for Life Sciences, 2004. [ bib | .pdf ]
[18] Olivier Dameron, Natalya F. Noy, Holger Knublauch, and Mark A. Musen. Accessing and manipulating ontologies using web services. In Proceeding of the Third International Semantic Web Conference (ISWC2004), Semantic Web Services workshop, 2004. [ bib | .pdf ]
[17] Olivier Dameron. JOT: a scripting environment for creating and managing ontologies. In 7th International Protégé Conference, 2004. [ bib | .pdf ]
[16] Olivier Dameron. Using the JOT plugin for reasoning with Protégé. In Workshop on Protégé and Reasoning -- 7th International Protégé Conference, 2004. [ bib ]
[15] Christian Barillot, Romain Valabregue, Jean-Pierre Matsumoto, Florent Aubry, Habib Benali, Yann Cointepas, Olivier Dameron, Michel Dojat, E. Duchesnay, Bernard Gibaud, Serge Kinkingnéhun, Dimitri Papadopoulos, Mélanie Pellegrini-Issac, and Éric Simon. Neurobase: Management of distributed and heterogeneous information sources in neuroimaging. In M. Dojat and B. Gibaud, editors, MICCAI 2004 Conference, pages 85--94, 2004. [ bib | .pdf ]
[14] Bernard Gibaud, Michel Dojat, Habib Benali, Olivier Dameron, Jean-Pierre Matsumoto, Mélanie Pellegrini-Issac, Romain Valabregue, and Christian Barillot. Toward an ontology for sharing neuroimaging data and processing methods: Experience learned from the development of a demonstrator. In M. Dojat and B. Gibaud, editors, MICCAI 2004 Conference, pages 15--23, 2004. [ bib | .pdf ]
[13] Holger Knublauch, Olivier Dameron, and Mark Musen. Weaving the biomedical semantic web with the Protégé OWL plugin. In First International Workshop on Formal Biomedical Knowledge Representation KRMED04, pages 39--47, 2004. [ bib | .pdf ]
[12] D.L. Rubin, O. Dameron, Y. Bashir, D. Grossman, P. Dev, and M.A. Musen. Using ontologies linked with geometric models to reason about penetrating injuries. In Intelligent Data Analysis in Medicine and Pharmacology IDAMAP04, 2004. [ bib | .pdf ]
[11] Olivier Dameron, Anita Burgun, Xavier Morandi, and Bernard Gibaud. Modelling dependencies between relations to insure consistency of a cerebral cortex anatomy knowledge base. In Studies in Health technology and informatics, pages 403--408, 2003. [ bib | .pdf ]
[10] Bernard Gibaud, Olivier Dameron, and Xavier Morandi. Re-use of a multi-purpose knowledge corpus on cortex anatomy for educational purposes. In Studies in Health technology and informatics, pages 439--444, 2003. [ bib | .pdf ]
[9] Olivier Dameron, Anita Burgun, Xavier Morandi, and Bernard Gibaud. Ontologie stratifiée de l'anatomie du cortex cérébral : application au maintien de la cohérence. In Journée Web Sémantique, Rennes, 2003. [ bib ]
[8] Christine Golbreich, Olivier Dameron, Bernard Gibaud, and Anita Burgun. Web ontology language requirements w.r.t expressiveness of taxononomy and axioms in medecine. In International Semantic Web Conference ISWC03 proceedings, volume 2870 of Lecture Notes in Computer Science. Springer, 2003. [ bib | .pdf ]
[7] Christine Golbreich, Olivier Dameron, Bernard Gibaud, and Anita Burgun. How to represent ontologies in view of a medical semantic web ? In AIME 03 Conference Proceedings, pages 51--60, 2003. [ bib | .pdf ]
[6] Christine Golbreich, Olivier Dameron, Bernard Gibaud, and Anita Burgun. Comment représenter les ontologies pour tendre vers un web sémantique médical ? In Journées Francaises de la Toile, 2003. [ bib ]
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[1] Olivier Dameron, Bernard Gibaud, and Xavier Morandi. Représentation de connaissances numériques et symboliques sur l'anatomie du cortex cérébral par des technologies du web. In Forum du Jeune Chercheur Compiègne, 2001. [ bib ]

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