Alignement

exemple de matrice d'hydrophobicité


         R  K  D  E  B  Z  S  N  Q  G  X  T  H  A  C  M  P  V  L  I  Y  F  W
Arg = R 10 10  9  9  8  8  6  6  6  5  5  5  5  5  4  3  3  3  3  3  2  1  0
Lys = K 10 10  9  9  8  8  6  6  6  5  5  5  5  5  4  3  3  3  3  3  2  1  0
Asp = D  9  9 10 10  8  8  7  6  6  6  5  5  5  5  5  4  4  4  3  3  3  2  1
Glu = E  9  9 10 10  8  8  7  6  6  6  5  5  5  5  5  4  4  4  3  3  3  2  1
Asx = B  8  8  8  8 10 10  8  8  8  8  7  7  7  7  6  6  6  5  5  5  4  4  3
Glx = Z  8  8  8  8 10 10  8  8  8  8  7  7  7  7  6  6  6  5  5  5  4  4  3
Ser = S  6  6  7  7  8  8 10 10 10 10  9  9  9  9  8  8  7  7  7  7  6  6  4
Asn = N  6  6  6  6  8  8 10 10 10 10  9  9  9  9  8  8  8  7  7  7  6  6  4
Gln = Q  6  6  6  6  8  8 10 10 10 10  9  9  9  9  8  8  8  7  7  7  6  6  4
Gly = G  5  5  6  6  8  8 10 10 10 10  9  9  9  9  8  8  8  8  7  7  6  6  5
??? = X  5  5  5  5  7  7  9  9  9  9 10 10 10 10  9  9  8  8  8  8  7  7  5
Thr = T  5  5  5  5  7  7  9  9  9  9 10 10 10 10  9  9  8  8  8  8  7  7  5
His = H  5  5  5  5  7  7  9  9  9  9 10 10 10 10  9  9  9  8  8  8  7  7  5
Ala = A  5  5  5  5  7  7  9  9  9  9 10 10 10 10  9  9  9  8  8  8  7  7  5
Cys = C  4  4  5  5  6  6  8  8  8  8  9  9  9  9 10 10  9  9  9  9  8  8  5
Met = M  3  3  4  4  6  6  8  8  8  8  9  9  9  9 10 10 10 10  9  9  8  8  7
Pro = P  3  3  4  4  6  6  7  8  8  8  8  8  9  9  9 10 10 10  9  9  9  8  7
Val = V  3  3  4  4  5  5  7  7  7  8  8  8  8  8  9 10 10 10 10 10  9  8  7
Leu = L  3  3  3  3  5  5  7  7  7  7  8  8  8  8  9  9  9 10 10 10  9  9  8
Ile = I  3  3  3  3  5  5  7  7  7  7  8  8  8  8  9  9  9 10 10 10  9  9  8
Tyr = Y  2  2  3  3  4  4  6  6  6  6  7  7  7  7  8  8  9  9  9  9 10 10  8
Phe = F  1  1  2  2  4  4  6  6  6  6  7  7  7  7  8  8  8  8  9  9 10 10  9
Trp = W  0  0  1  1  3  3  4  4  4  5  5  5  5  5  6  7  7  7  8  8  8  9 10